View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_47 (Length: 281)
Name: NF0964_low_47
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 24362718 - 24362899
Alignment:
| Q |
43 |
atactatttattctatgcagtgtgtaccaaatttagaaggggttattgagaacaaagagaagtatgtggttctgcagattgggaaaagatcatggactgt |
142 |
Q |
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| T |
24362718 |
atactatttattctatgcagtgtgtaccaaatttagaaggggttattgagaacaaagagaagtatgtggttctgcagattgggaaaagatcatggaatgt |
24362817 |
T |
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| Q |
143 |
gaaattgctccgttattacgaggctaaaaatggtcgccacctatcagcgggttggtccttgtttgcaaatgaaagtgaactg |
224 |
Q |
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| T |
24362818 |
gaaattgctccgttattacgaggctaaaaatggtcgccacctatcagcaggttggtccttgtttgcaagtgaaagtggactg |
24362899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 24346778 - 24346931
Alignment:
| Q |
55 |
ctatgcagtgtgtaccaaatttagaaggggttattgagaacaaagagaagtatgtggttctgcagattgggaaaagatcatggactgtgaaattgctccg |
154 |
Q |
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| T |
24346778 |
ctatgcagtgtgtaccaactttaaatggggttattgagaacaaagaaaagtatgtgatgctgcagattgggaaaagatcatggaatctgaaattgctccc |
24346877 |
T |
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| Q |
155 |
ttattacgaggctaaaaatggtcgccacctatcagcgggttggtccttgtttgc |
208 |
Q |
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| T |
24346878 |
ttattgcgaggctagaaatgttcgccgcctttcggccggttggtccttgtttgc |
24346931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 24359232 - 24359378
Alignment:
| Q |
73 |
atttagaaggggttattgagaacaaagagaagtatgtggttctgcagattgggaaaagatcatggactgtgaaattgctccgttattacgaggctaaaaa |
172 |
Q |
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| T |
24359232 |
atttaaaagggattattgagaacaaagagaagaatgttcttctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagattttaaa |
24359331 |
T |
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| Q |
173 |
tggtcgccacctatcagcgggttggtccttgtttgcaaatgaaagtg |
219 |
Q |
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| T |
24359332 |
tggtcgccgcctatcggccggttgatccttgtttgcaagtgaaagtg |
24359378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 24355886 - 24355982
Alignment:
| Q |
56 |
tatgcagtgtgtaccaaatttagaaggggttattgagaacaaagagaagtatgtggttctgcagattgggaaaagatcatggactgtgaaattgctc |
152 |
Q |
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| T |
24355886 |
tatgcagaatgtaccaaattttaaaggggttattgagaacaaagagaaggatgtgatgcttcagattgggaaaagatcatggaatgtgaaattgctc |
24355982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 24370275 - 24370462
Alignment:
| Q |
39 |
gataatactatt-tattctatgcagtgtgtaccaaatttagaaggggttattgagaacaaagagaagtatgtggttctgcagattgggaaaagatcatgg |
137 |
Q |
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| T |
24370275 |
gataatagtattatatactatgcagtctgtaccagatttaaaaggggttattgagaacaaggacacaaatgtgatgctgctgattgggaaaagatcatgg |
24370374 |
T |
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| Q |
138 |
actgtgaaattgctccgttattacgaggctaaaaatggtcgccacctatcagcgggttggtccttgtttgcaaatgaaagtgaactga |
225 |
Q |
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| T |
24370375 |
aatgtgaaactacttcgttcttatgagggcaaaaatggccgtcgcctttccgcgggctggtacttatttgcaagagaaagtggactga |
24370462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 24364256 - 24364141
Alignment:
| Q |
50 |
ttattctatgcagtgtgtaccaaatttagaaggggttattgagaacaaagagaagtatgtggttctgcagattgggaaaagatcatggactgtgaaattg |
149 |
Q |
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| T |
24364256 |
ttatactatgcagtctgtaccagatttaaaaggggttattgagaacaaggacacaaatgtgatgctgctgattgggaaaagatcatggaatgtgaaatta |
24364157 |
T |
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| Q |
150 |
ctccgttattacgagg |
165 |
Q |
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| T |
24364156 |
cttcgttgttatgagg |
24364141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 24352506 - 24352576
Alignment:
| Q |
81 |
ggggttattgagaacaaagagaagtatgtggttctgcagattgggaaaagatcatggactgtgaaattgct |
151 |
Q |
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| T |
24352506 |
ggggttattgagaacaaggagaagaatctggtgcttcagattggagaaagatcatggaaggtgaaattgct |
24352576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 24403613 - 24403649
Alignment:
| Q |
120 |
attgggaaaagatcatggactgtgaaattgctccgtt |
156 |
Q |
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| T |
24403613 |
attgggaaaagaacatggaatgtgaaattgctccgtt |
24403649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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