View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0964_low_49 (Length: 270)

Name: NF0964_low_49
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0964_low_49
NF0964_low_49
[»] chr6 (5 HSPs)
chr6 (16-268)||(15307515-15307767)
chr6 (16-268)||(15312809-15313061)
chr6 (16-255)||(33457887-33458126)
chr6 (16-193)||(10740125-10740302)
chr6 (38-207)||(34822093-34822262)
[»] chr8 (1 HSPs)
chr8 (38-255)||(2994750-2994967)
[»] scaffold0061 (2 HSPs)
scaffold0061 (16-207)||(13734-13925)
scaffold0061 (16-207)||(22792-22983)
[»] chr3 (2 HSPs)
chr3 (38-207)||(37190372-37190541)
chr3 (16-159)||(19474394-19474537)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 15307515 - 15307767
Alignment:
Q  16 ataaatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatg 115  Q
    ||||||||||||||| || |||||||| ||||||||| | || |||||||  |||||||||||||||||||||||||||||||| || ||||||||||||    
T  15307515 ataaatctcttgcatcaattctgaaatacgaaccaaaccaccttgagaaaaacgttctttgagatcattccacacatccatggcgttttccatgaagatg 15307614  T
Q  116 atggactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaattcatcat 215  Q
    |||||||||||||||||||| |||||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||   |||||    
T  15307615 atggactgagaaattgaaggggaaacataattcaagatccatgaaagtattaacatattgcaacgattccaagaacaataggttggatcaaacaaatcat 15307714  T
Q  216 ctaccggtggaatcgttccatccacaaattcaagcttcatcttcgcgccaaga 268  Q
    | |||| ||| ||||||||||| ||||| |||| |||||||||||||||||||    
T  15307715 ccaccgatgggatcgttccatcaacaaactcaaacttcatcttcgcgccaaga 15307767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 15312809 - 15313061
Alignment:
Q  16 ataaatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatg 115  Q
    ||||||||||||||| || |||||||| ||||||||| | || |||||||  |||||||||||||||||||||||||||||||| || ||||||||||||    
T  15312809 ataaatctcttgcatcaattctgaaatacgaaccaaaccaccttgagaaaaacgttctttgagatcattccacacatccatggcgttttccatgaagatg 15312908  T
Q  116 atggactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaattcatcat 215  Q
    |||||||||||||||||||| |||||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||   |||||    
T  15312909 atggactgagaaattgaaggggaaacataattcaagatccatgaaagtattaacatattgcaacgattccaagaacaataggttggatcaaacaaatcat 15313008  T
Q  216 ctaccggtggaatcgttccatccacaaattcaagcttcatcttcgcgccaaga 268  Q
    | |||| ||| ||||||||||| ||||| |||| |||||||||||||||||||    
T  15313009 ccaccgatgggatcgttccatcaacaaactcaaacttcatcttcgcgccaaga 15313061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 33458126 - 33457887
Alignment:
Q  16 ataaatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatg 115  Q
    |||||| |||||||| |  || ||||| ||||||||||| || |||| ||  ||||| || ||||||||||||||||||||||| || |||||||| |      
T  33458126 ataaatttcttgcataagttcagaaatacgaaccaaatcaccttgagcaaaacgttccttaagatcattccacacatccatggcgttttccatgaaaact 33458027  T
Q  116 atggactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaattcatcat 215  Q
    || || |||||||||||||||   || ||||||| |||||||||  | || |||||||| || |||||||||| |||| |||  ||||||||   |||      
T  33458026 atagattgagaaattgaaggatctactgaattcaagatccatgagtgaatcaacatattacaccgattccaagcacgaaaagaaggatcaaacgaatctg 33457927  T
Q  216 ctaccggtggaatcgttccatccacaaattcaagcttcat 255  Q
      ||||| ||||| |||||||| |||||||||| ||||||    
T  33457926 taaccggaggaatagttccatcaacaaattcaaacttcat 33457887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 10740302 - 10740125
Alignment:
Q  16 ataaatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatg 115  Q
    |||||| ||||||||||| ||| |||||   |||||||  || |||| ||  ||||  || ||||| ||||  |||||||| ||||| |||||||| | |    
T  10740302 ataaatttcttgcattaattcttaaattattaccaaattaccttgagcaaatcgtttcttaagatcgttcctaacatccatagcattttccatgaaaacg 10740203  T
Q  116 atggactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacga 193  Q
    |||||||||||||| |||||||||||  |||| | |||||||||| | || ||||| |||||| ||||||||| ||||    
T  10740202 atggactgagaaatcgaaggagaaacataatttaagatccatgaatgaatcaacatgttgcaatgattccaagcacga 10740125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 34822262 - 34822093
Alignment:
Q  38 gaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatgatggactgagaaattgaaggag 137  Q
    ||||| ||||||||||| || |||| ||  ||||| || ||||||||||||||||||||||| || |||||||| |  || || ||||||||||||| |     
T  34822262 gaaatacgaaccaaatcaccttgagcaaaacgttccttaagatcattccacacatccatggcgttttccatgaaaacaatagattgagaaattgaagaat 34822163  T
Q  138 aaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaa 207  Q
      || ||||||| |||||||||  | || | |||||| || |||||||||| |||| |||  ||||||||    
T  34822162 ctactgaattcaagatccatgagtgaatcagcatattacaccgattccaagcacgaaaagaaggatcaaa 34822093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 255
Target Start/End: Complemental strand, 2994967 - 2994750
Alignment:
Q  38 gaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatgatggactgagaaattgaaggag 137  Q
    ||||| ||||||||||| || |||| ||  ||||| || ||||||||||||||||||||||| || |||||||| |  || || |||||||||||||||     
T  2994967 gaaatacgaaccaaatcaccttgagcaaaccgttccttaagatcattccacacatccatggcgttttccatgaaaacaatagattgagaaattgaaggat 2994868  T
Q  138 aaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaattcatcatctaccggtggaatcgttccatc 237  Q
      || ||||||| |||||||||  | || | |||||| || |||||||||| |||| |||  ||||||||   |||    ||||| ||||| ||||||||    
T  2994867 ctactgaattcaagatccatgagtgaatcagcatattacaccgattccaagcacgaaaagaaggatcaaacgaatctgtaaccggaggaatagttccatc 2994768  T
Q  238 cacaaattcaagcttcat 255  Q
     |||||||||| ||||||    
T  2994767 aacaaattcaaacttcat 2994750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 13734 - 13925
Alignment:
Q  16 ataaatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatg 115  Q
    ||||||||||||| | |  || ||||||||||||||||| || |||| || || ||| ||||||| |||||||||||||||||  || |||||||| |      
T  13734 ataaatctcttgcttaagttcagaaattcgaaccaaatcaccttgagcaaagcattccttgagataattccacacatccatggagttttccatgaaaaca 13833  T
Q  116 atggactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaa 207  Q
    || || |||||| ||||||||   || ||||||| |||||||||  | || | ||| ||||| |||||||||| |||| |||  ||||||||    
T  13834 atagattgagaatttgaaggatctactgaattcaagatccatgagtgaatcagcatgttgcaccgattccaagcacgaaaagaaggatcaaa 13925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 22792 - 22983
Alignment:
Q  16 ataaatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatg 115  Q
    ||||||||||||| | |  || ||||||||||||||||| || |||| || || ||| ||||||| |||||||||||||||||| || |||||| | |      
T  22792 ataaatctcttgcttaagttcagaaattcgaaccaaatcaccttgagcaaagcattccttgagataattccacacatccatggcgttttccatgcaaaca 22891  T
Q  116 atggactgagaaattgaaggagaaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaa 207  Q
    || || |||||| ||||||||   || ||||||| |||||||||  | || | ||| ||||| |||||||||| |||| |||  ||||||||    
T  22892 atagattgagaatttgaaggatctactgaattcaagatccatgagtgaatcagcatgttgcaccgattccaagcacgaaaagaaggatcaaa 22983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 37190541 - 37190372
Alignment:
Q  38 gaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatgatggactgagaaattgaaggag 137  Q
    ||||| ||||||||||| || |||| ||  ||||| || ||||||||||||||||||||||| || |||||||| |  || || ||||||||||||| |     
T  37190541 gaaatacgaaccaaatcaccttgagcaaaacgttccttaagatcattccacacatccatggcgttttccatgaaaacaatagattgagaaattgaagaat 37190442  T
Q  138 aaaccgaattcaggatccatgaaagtattaacatattgcaacgattccaagaacgataagttggatcaaa 207  Q
      || ||||||| |||||||||  | || | |||||| || |||||||||| |||| |||  ||||||||    
T  37190441 ctactgaattcaagatccatgagtgaatcagcatattacaccgattccaagcacgaaaagaaggatcaaa 37190372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 19474394 - 19474537
Alignment:
Q  16 ataaatctcttgcattaactctgaaattcgaaccaaatctccgtgagaaatgcgttctttgagatcattccacacatccatggcattatccatgaagatg 115  Q
    |||||| |||||||| |  || |||||||  |||||||| || || |||| |||||| || | ||||||||| |||||   ||| || ||||||||||||    
T  19474394 ataaatttcttgcatgagttcagaaattcttaccaaatcaccatgtgaaaagcgttcattcaaatcattccaaacatcacaggcgttttccatgaagatg 19474493  T
Q  116 atggactgagaaattgaaggagaaaccgaattcaggatccatga 159  Q
    ||||| || | |||||||||||| || ||||||| |||||||||    
T  19474494 atggattgtgcaattgaaggagacacagaattcacgatccatga 19474537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University