View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0964_low_5 (Length: 553)
Name: NF0964_low_5
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 11 - 524
Target Start/End: Complemental strand, 47506897 - 47506394
Alignment:
| Q |
11 |
cacagacaccagcaaggttatgttaataatggtggatactcacttcatccatgtgagcacactgccccgtgggtttcgggagtgacaaatttgaatgaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47506897 |
cacagacaccagcaaggttatgttaataatggtggatactcacttcatccatgtgagcacactgccccgtgggtttcgggagtgacaaatttgaatgaat |
47506798 |
T |
|
| Q |
111 |
agcagcaagagaagagaaagggacagtcaaagcattgggatttgtgaatatcaaactctcttattataccataagatcgatgattgaattgaaacagaca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47506797 |
agcagcaagagaagagaaagggacagtcaaagcattgggatttgtgaatatcaaa--ctcttattataccataa----gatgattgaattgaaacagaca |
47506704 |
T |
|
| Q |
211 |
cacttttaatttgttgaaataagtggtatgggagttagtggttgtggggtatataaactcgttattataagtgtgtcagaaagaaattttttataagtat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47506703 |
cacttttaatttgttgaaataagtggtatgggagttagtggttgtggggtatataaactcgttattataagtgtgtcagaaagaaattttttataa---- |
47506608 |
T |
|
| Q |
311 |
gtataatgcacacccaccacaaaacaatcatgttcacttatccccttccttcattgagttttttggggtcacatttcattttannnnnnnntgcatgaca |
410 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47506607 |
gtataatgcatacccaccacaaaacaatcatgttcacttatccccttccttcattgagttttttggggtcacatttcattttacccccccctgcatgaca |
47506508 |
T |
|
| Q |
411 |
gctctttccacaattcaactctacctatatacatatttagatgctgtaaatcctttctttttcaattttctaatttagtaaaacattgtcatcaattttc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47506507 |
gctctttccacaattcaactctacctatatacatatttagatgctgtaaatcctttctttttcaattttctaatttagtaaaacattgtcatcaatttgc |
47506408 |
T |
|
| Q |
511 |
ctttgggccaataa |
524 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
47506407 |
ctttgggccaataa |
47506394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University