View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_52 (Length: 246)
Name: NF0964_low_52
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 48894454 - 48894593
Alignment:
| Q |
1 |
ctttgaacttcaatacccgattgttgaattctctatttcattgaagcaagagcttaatacacttgttgctacttgtgcaacnnnnnnncctgaacttgag |
100 |
Q |
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| T |
48894454 |
ctttgaactttaatacccgattgttgaattctctatttcattgaagcaagagcttaatacacttgttgctacttgtgcaactttttttcctgaacttgag |
48894553 |
T |
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| Q |
101 |
attatgcatgtgaccgtattttcaatggttagttataaag |
140 |
Q |
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| T |
48894554 |
attatgcatgtgaccatattttcaatggttagttataaag |
48894593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 48894933 - 48895034
Alignment:
| Q |
143 |
ttgaaagagtgatctatatatattatatttctcagtcttttgattgtattttgaatcttactattttattcaggttacaacttccgtcaatattattcga |
242 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48894933 |
ttgaaaaagtgatctatatatattatatttctcagtcttttgattgtattttgaatcttactattttattcaggttacaacttccgtcaatattattgga |
48895032 |
T |
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| Q |
243 |
ca |
244 |
Q |
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|| |
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| T |
48895033 |
ca |
48895034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 48107864 - 48107749
Alignment:
| Q |
24 |
ttgaattctctatttcattgaagcaagagcttaatacacttgttgctacttgtgcaacnnnnnnncctgaacttgagattatgcatgtgaccgtattttc |
123 |
Q |
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| T |
48107864 |
ttgaattcttcatttcattgaaacaagagcttaatacatatgttgctttatgtgcaactttttttcctgaacttgagattatgcagttgagcacattatc |
48107765 |
T |
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| Q |
124 |
aatggttagttataaa |
139 |
Q |
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| T |
48107764 |
aatggttagtcataaa |
48107749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 48571412 - 48571372
Alignment:
| Q |
96 |
ttgagattatgcatgtgaccgtattttcaatggttagttat |
136 |
Q |
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| T |
48571412 |
ttgagattatacatgtgaccatattttcaatggttagttat |
48571372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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