View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_6 (Length: 533)
Name: NF0964_low_6
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 161 - 522
Target Start/End: Original strand, 36576455 - 36576815
Alignment:
| Q |
161 |
gaggctacatatattaaaattttgcttttgctctcatttatttattaaaattattggactggcccgatacatatataaaacttctccaaaagaattaaaa |
260 |
Q |
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| T |
36576455 |
gaggctacatatattaaa-ttttgcttttgctctcatttatttttaaaaattattggactgacccgatacatatataaaacttctccaaaagaattaaaa |
36576553 |
T |
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| Q |
261 |
ccaaataattacataatcttattattatggggaacatatgcatcgtatggctaatattgataactcaaatgatcatggtgacttgcaagaatgaaaatta |
360 |
Q |
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| T |
36576554 |
ccaaataattacataatcttattattatggggaacatatgcatcgtatggctaatattgataactcaaatgatcatggtgacttgcaataatgaaaatta |
36576653 |
T |
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| Q |
361 |
tgtaccagcagtaattgtgtttggtgactcctctgttgattctggaaacaacaatatgatatcaacatttctaaagagcaattttagaccttacggtcgt |
460 |
Q |
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| T |
36576654 |
tgtaccagcagtaattgtgtttggtgactcctctgttgattctggaaacaacaatatgatatcaacatttctaaagagcaattttagaccttacggtcgt |
36576753 |
T |
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| Q |
461 |
gacatcgatggtggccgccccaccggacgattttcaaacggccgtattccaccagatttcat |
522 |
Q |
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| T |
36576754 |
gacatcgatggtggccgccccaccggacgattttcaaacggccgtattccaccagatttcat |
36576815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 295 - 523
Target Start/End: Original strand, 36563959 - 36564187
Alignment:
| Q |
295 |
catatgcatcgtatggctaatattgataactcaaatgatcatggtgacttgcaagaatgaaaattatgtaccagcagtaattgtgtttggtgactcctct |
394 |
Q |
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| T |
36563959 |
catatgcatagcatggttaatattgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattgtctttggtgattcttct |
36564058 |
T |
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| Q |
395 |
gttgattctggaaacaacaatatgatatcaacatttctaaagagcaattttagaccttacggtcgtgacatcgatggtggccgccccaccggacgatttt |
494 |
Q |
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| T |
36564059 |
gtggattctggaaacaataataggatagctacacttctcaagagcaattttaaaccttacggccgtgacttcgaaggtggccgccctaccggacggtttt |
36564158 |
T |
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| Q |
495 |
caaacggccgtattccaccagatttcatc |
523 |
Q |
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| T |
36564159 |
gtaacggtcgtactccaccggacttcatc |
36564187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 36576322 - 36576380
Alignment:
| Q |
31 |
agaaattaaaatatttgtatgtatactcagacacgttaaaagccacatacataccaacg |
89 |
Q |
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| T |
36576322 |
agaaattaaaatatttttatgtatactcagacacgttaaaagccacatacataccaacg |
36576380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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