View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0964_low_64 (Length: 215)

Name: NF0964_low_64
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0964_low_64
NF0964_low_64
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-141)||(221656-221797)
[»] chr6 (1 HSPs)
chr6 (13-141)||(2897346-2897475)
[»] chr3 (2 HSPs)
chr3 (13-138)||(17150762-17150888)
chr3 (2-141)||(23824709-23824849)
[»] chr7 (5 HSPs)
chr7 (2-133)||(20694956-20695088)
chr7 (2-133)||(20700434-20700566)
chr7 (13-141)||(591253-591382)
chr7 (2-51)||(22862687-22862736)
chr7 (2-51)||(47556522-47556571)
[»] scaffold0032 (1 HSPs)
scaffold0032 (2-51)||(49921-49970)
[»] chr8 (1 HSPs)
chr8 (2-137)||(10798621-10798757)
[»] chr4 (1 HSPs)
chr4 (2-141)||(17823722-17823862)
[»] chr2 (1 HSPs)
chr2 (13-138)||(21967738-21967864)


Alignment Details
Target: scaffold0003 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 221656 - 221797
Alignment:
Q  1 atgttgtgtattcaagaatcgaagttggaggtggttgatgagttcttgtgttgatcgttgtgggagc-tgagccgttggccttttcttataaaccttatg 99  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |  ||| ||||||||||||||||||||||||| ||    
T  221656 atgttgtgtattcaataatcgaagttggaggtggttgatgagttcttgtgtcgatcgttgtggggggatgatccgttggccttttcttataaaccttctg 221755  T
Q  100 ttggtgcctctggaggtattatcactgtgtgggatcctagtg 141  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  221756 ttggtgcctctggaggtattatcactgtgtgggatcctagtg 221797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 2897475 - 2897346
Alignment:
Q  13 caagaatcgaagttggaggtggttgatgagttcttgtgttgatcgttgtgggagc-tgagccgttggccttttcttataaaccttatgttggtgcctctg 111  Q
    |||||||||||| |||| ||||||||||||| ||||||| ||||  | |||| || ||| ||  |||||||||||| |||||||| ||||||||| || |    
T  2897475 caagaatcgaaggtggaagtggttgatgagtacttgtgtcgatctatttgggggcctgatcccatggccttttcttttaaaccttctgttggtgcgtcag 2897376  T
Q  112 gaggtattatcactgtgtgggatcctagtg 141  Q
    | |||||||| |||||||||||||||||||    
T  2897375 gtggtattattactgtgtgggatcctagtg 2897346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 17150762 - 17150888
Alignment:
Q  13 caagaatcgaagttggaggtggttgatgagttcttgtgttgatcgttgtgggag-ctgagccgttggccttttcttataaaccttatgttggtgcctctg 111  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||  | |||| | |||| ||  |||| ||||||| ||||||||  |||||| | ||||    
T  17150762 caagaatcgaagttggaagtggttgatgagttcttgtgtcgatctatttgggggcctgatcctatggctttttcttttaaaccttcagttggtacatctg 17150861  T
Q  112 gaggtattatcactgtgtgggatccta 138  Q
    | |||||||| || |||||||||||||    
T  17150862 gtggtattattacggtgtgggatccta 17150888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 23824849 - 23824709
Alignment:
Q  2 tgttgtgtattcaagaatcgaagttggaggtggttgatgagttcttgtgttgatcgttgtgggag-ctgagccgttggccttttcttataaaccttatgt 100  Q
    |||| ||||| |||||||||||||||||||||||||| || || |||||| | ||  | |||| | |||| ||  |||||||||||| |||| |||  ||    
T  23824849 tgttatgtatacaagaatcgaagttggaggtggttgacgaatttttgtgtcgttctctatgggggtctgacccaatggccttttcttttaaatcttcagt 23824750  T
Q  101 tggtgcctctggaggtattatcactgtgtgggatcctagtg 141  Q
    ||| || ||||| |||||||| ||||||||||| |||||||    
T  23824749 tggcgcttctggtggtattattactgtgtgggaccctagtg 23824709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 20694956 - 20695088
Alignment:
Q  2 tgttgtgtattcaagaatcgaagttggaggtggttgatgagttcttgtgttgatcgttgt-gggagctgagccgttggccttttcttataaaccttatgt 100  Q
    ||||||||||||||||||| ||||||||||||||   |||| |||| ||| | ||||||| |||| |||  ||| |||| ||||||| ||||||||  ||    
T  20694956 tgttgtgtattcaagaatctaagttggaggtggtgagtgaggtcttatgtcgttcgttgtggggatctggtccgatggctttttcttttaaaccttcagt 20695055  T
Q  101 tggtgcctctggaggtattatcactgtgtggga 133  Q
    |||||| ||||| |||||||| || ||||||||    
T  20695056 tggtgcgtctggtggtattattacagtgtggga 20695088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 20700434 - 20700566
Alignment:
Q  2 tgttgtgtattcaagaatcgaagttggaggtggttgatgagttcttgtgttgatcgttgt-gggagctgagccgttggccttttcttataaaccttatgt 100  Q
    ||||||||||||||||||| ||||||||||||||   |||| |||| ||| | ||||||| |||| |||  ||| |||| ||||||| ||||||||  ||    
T  20700434 tgttgtgtattcaagaatctaagttggaggtggtgagtgaggtcttatgtcgttcgttgtggggatctggtccgatggctttttcttttaaaccttcagt 20700533  T
Q  101 tggtgcctctggaggtattatcactgtgtggga 133  Q
    |||||| ||||| |||||||| || ||||||||    
T  20700534 tggtgcgtctggtggtattattacagtgtggga 20700566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 591382 - 591253
Alignment:
Q  13 caagaatcgaagttggaggtggttgatgagttcttgtgttgatcgttgt-gggagctgagccgttggccttttcttataaaccttatgttggtgcctctg 111  Q
    |||||| ||||||||||||||||||||||||| |||||| | ||  | | |||| ||   ||  |||| ||||||| |||| |||  |||||||| ||||    
T  591382 caagaaacgaagttggaggtggttgatgagtttttgtgtcgttctatatggggacctactcctatggctttttcttttaaatcttcagttggtgcgtctg 591283  T
Q  112 gaggtattatcactgtgtgggatcctagtg 141  Q
    | |||||||| || ||||||||||||||||    
T  591282 gtggtattattacggtgtgggatcctagtg 591253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 22862687 - 22862736
Alignment:
Q  2 tgttgtgtattcaagaatcgaagttggaggtggttgatgagttcttgtgt 51  Q
    |||| ||||||||||| ||||||||||||||||| |||||||| ||||||    
T  22862687 tgttatgtattcaagagtcgaagttggaggtggtggatgagtttttgtgt 22862736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 47556571 - 47556522
Alignment:
Q  2 tgttgtgtattcaagaatcgaagttggaggtggttgatgagttcttgtgt 51  Q
    |||| ||||||||||| ||||||||||||||||| |||||||| ||||||    
T  47556571 tgttatgtattcaagagtcgaagttggaggtggtggatgagtttttgtgt 47556522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 49921 - 49970
Alignment:
Q  2 tgttgtgtattcaagaatcgaagttggaggtggttgatgagttcttgtgt 51  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  49921 tgttatgtatacaagaatcgaagttggaggtggttgatgagttcttgtgt 49970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 10798621 - 10798757
Alignment:
Q  2 tgttgtgtattcaagaatcgaagttggaggtggttgatgagttcttgtgttgatcgttgt-gggagctgagccgttggccttttcttataaaccttatgt 100  Q
    |||| ||||||||||| ||||||||||||||||| |||||||| |||||| | || || | ||| |||||   | |||| | ||| | |||| |||  ||    
T  10798621 tgttatgtattcaagagtcgaagttggaggtggtggatgagtttttgtgtcgttccttatggggggctgatttgatggcttattcctttaaagcttcagt 10798720  T
Q  101 tggtgcctctggaggtattatcactgtgtgggatcct 137  Q
     ||||| ||||||||||||||||| ||||||||||||    
T  10798721 cggtgcttctggaggtattatcacggtgtgggatcct 10798757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 17823722 - 17823862
Alignment:
Q  2 tgttgtgtattcaagaatcgaagttggaggtggttgatgagttcttgtgttgatcgttgtgggag-ctgagccgttggccttttcttataaaccttatgt 100  Q
    |||| ||||| ||||||||||||||||||||||||||||| || |||||| | ||  | |||| | |||  ||  |||||||||||| |||| |||  ||    
T  17823722 tgttatgtatacaagaatcgaagttggaggtggttgatgaatttttgtgtcgttctctatgggggtctgctccaatggccttttcttttaaatcttcagt 17823821  T
Q  101 tggtgcctctggaggtattatcactgtgtgggatcctagtg 141  Q
    ||  || ||||| |||||||| || ||||||||||||||||    
T  17823822 tgacgcatctggtggtattattacggtgtgggatcctagtg 17823862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 21967864 - 21967738
Alignment:
Q  13 caagaatcgaagttggaggtggttgatgagttcttgtgttgatcgttgtgggag-ctgagccgttggccttttcttataaaccttatgttggtgcctctg 111  Q
    |||||||| |||||||| ||||||||||||||||||||| | ||  | |||| | |||| ||  |||| |||||||  ||| ||   |||||||||||||    
T  21967864 caagaatcaaagttggaagtggttgatgagttcttgtgtcgttctatttgggggtctgatcctatggctttttctttcaaagctgcagttggtgcctctg 21967765  T
Q  112 gaggtattatcactgtgtgggatccta 138  Q
    | |||||||| || |||||||||||||    
T  21967764 gtggtattattacggtgtgggatccta 21967738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University