View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0964_low_8 (Length: 519)
Name: NF0964_low_8
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 303
Target Start/End: Original strand, 48288060 - 48288333
Alignment:
| Q |
30 |
ggatttgtcaaggaacaaagatgcccccttatcccctcttattaattaactatgagagaattgagaaaaggaaataatcaggtagacaattaaacaatgt |
129 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48288060 |
ggatttgtcgaggaacaaagatgccccctcatcccctcttattaattaactatgagagaattgagaaaaggaaataatcaggtagacaattaaacaatgt |
48288159 |
T |
|
| Q |
130 |
tacctttttaaggtgtatgtatcattctcttctgaaactatggtaatgggagagtttgaggaccaagactaccttgagaatcaaaaggtgaaatatatat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48288160 |
tacctttttaaggtgtatgtatcattctcttatgaaactatggtaatgggagagcttgaggaccaagactaccttgagaatcaaaaggtgaaatatatat |
48288259 |
T |
|
| Q |
230 |
tcctatggttagtggctaagagaaggatatgagatcttgacatgtgatatatcttgacaaatatgttgtatctg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48288260 |
gcctatggttagtggctaagagaaggatatgagatcttgacatgtgatatatcttgacaaatatgttgtatctg |
48288333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 314 - 511
Target Start/End: Original strand, 48288481 - 48288675
Alignment:
| Q |
314 |
ctttctttcttccttgacatggatcaaattcaattcattttatgagtatatatgtgtagtttgtgatatatgtaagttcattttatgagcaatgtccttc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48288481 |
ctttctttcttccttgacatggatcaaatgcaa---attttatgagtatatatgtgtagtttgtgatatatgtaagttcattttatgagcaatgtccttc |
48288577 |
T |
|
| Q |
414 |
tcttggtccaaaaagaaaattgacattgtcaattacttcaaattagtctattnnnnnnntaatgttgtaaatcgtcataatcctagtaggcctatgat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
48288578 |
tcttggtccaaaaagaaaattgacattgtcaattacttcaaattagtctattaagaaaataatgttgtaaatcgtcataatcctggtaggcctttgat |
48288675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University