View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0965_high_10 (Length: 391)
Name: NF0965_high_10
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 29 - 383
Target Start/End: Original strand, 15052550 - 15052904
Alignment:
| Q |
29 |
cttgtcattgtaggtatcacaaggcaaaagattgatttagggtacagagttcggacataaatttacaggttgagtgattttgagtgatttaaaattgatt |
128 |
Q |
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| T |
15052550 |
cttgtcattgtaggtatcacaaggcaaaagattgatttagggtacagagttcggacataaatttacaggttgagtgattttgagtgatttaaaattgatt |
15052649 |
T |
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| Q |
129 |
cttttagacgattgattttggtgcttaaaaactcgacatcgtaaatatataatgaaaccttgaaattttcttcctttcggtggtagatgatgtcggtttg |
228 |
Q |
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| T |
15052650 |
cttttagacgattgattttggtgcttaaaaactcgacatcgtaaatatataatgaaaccttgaaattttcttcctttcggtggtagatgatgtcggtttg |
15052749 |
T |
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| Q |
229 |
actaagatgaatttaatatgatgaaatgaattagagatcagatgactgcttcactacacttcgtgataggtggtgacatctccaagaacccgttttgtgc |
328 |
Q |
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| T |
15052750 |
actaagatgaatttaatatgatgaaatgaattagagatcagatgactgcttcactacacttcgtgataggtggtgacatctccaagaacccgttttgtgc |
15052849 |
T |
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| Q |
329 |
cctagatgatgcgaacttgatggtactttttctggatcggtcaaaggcctatgct |
383 |
Q |
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| T |
15052850 |
cctagatgatgtgaacttgatggtactttttctggatcggtcaaaggcttatgct |
15052904 |
T |
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