View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0965_high_17 (Length: 280)
Name: NF0965_high_17
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 29208503 - 29208685
Alignment:
| Q |
1 |
tggccatggaaaattaaggaaattgcaaaagaaagtgaaacaattaggacatagtattaattaactaagaggaagtagaacaaaactacattataaaaaa |
100 |
Q |
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| T |
29208503 |
tggccatggaaaattaaggaaaatgcaaaagaaagtgaaacaattaggacatagtattaattaactaagaggaagtagaacaaaactacattataaaaaa |
29208602 |
T |
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| Q |
101 |
ttaatcactagtccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatgtaacc |
183 |
Q |
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| T |
29208603 |
ttaatcactagtccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatgtaacc |
29208685 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 38377782 - 38377716
Alignment:
| Q |
112 |
tccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatg |
178 |
Q |
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| T |
38377782 |
tccaaccttcaaaacagattcagtgtttggtctctccatgtttaagtggacttgatgtgtaactatg |
38377716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 38378154 - 38378088
Alignment:
| Q |
9 |
gaaaattaaggaaattgcaaa--agaaagtgaaacaattaggacatagtattaattaactaagaggaa |
74 |
Q |
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| T |
38378154 |
gaaaattaaggaaaatgcaaagtagaatg-gaaacaattaggaattagtattaattaaccaagaggaa |
38378088 |
T |
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