View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0965_high_19 (Length: 237)
Name: NF0965_high_19
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_high_19 |
 | |
|
| [»] scaffold1393 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1393 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold1393
Description:
Target: scaffold1393; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 366 - 151
Alignment:
| Q |
4 |
gaattatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttct |
103 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
366 |
gaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttct |
267 |
T |
|
| Q |
104 |
tttggtccaatggtactcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatact |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
266 |
tttggtccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatact |
167 |
T |
|
| Q |
204 |
tcctctgatgatgtcc |
219 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
166 |
tcctctgatgttgtcc |
151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 4806509 - 4806718
Alignment:
| Q |
4 |
gaattatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttct |
103 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4806509 |
gaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttct |
4806608 |
T |
|
| Q |
104 |
tttggtccaatggtactcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatact |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4806609 |
tttggtccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatact |
4806708 |
T |
|
| Q |
204 |
tcctctgatg |
213 |
Q |
| |
|
|||||||||| |
|
|
| T |
4806709 |
tcctctgatg |
4806718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 12765126 - 12765335
Alignment:
| Q |
4 |
gaattatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttct |
103 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12765126 |
gaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttct |
12765225 |
T |
|
| Q |
104 |
tttggtccaatggtactcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatact |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12765226 |
tttggtccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatact |
12765325 |
T |
|
| Q |
204 |
tcctctgatg |
213 |
Q |
| |
|
|||||||||| |
|
|
| T |
12765326 |
tcctctgatg |
12765335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 13566686 - 13566527
Alignment:
| Q |
8 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
107 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||||||||||||||||||| | |||||| |||||||||||||| || ||||| || |||||||||||| |
|
|
| T |
13566686 |
tatattgtcaaaaatattcttttcaatgtgcataacatcaagattatgtcttagtaaattgtctttccagtaaggaaggtcccaaaaaatacttcttttg |
13566587 |
T |
|
| Q |
108 |
gtccaatggtactcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaat |
167 |
Q |
| |
|
|||||| || || | || |||| ||| ||||| ||||||||||||||||| |||| |
|
|
| T |
13566586 |
atccaattgtgcttttccccatattcatggtatctgattcttttgccaacatctgggaat |
13566527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 7302339 - 7302426
Alignment:
| Q |
30 |
tcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggt |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
7302339 |
tcaatgtgcattacatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggt |
7302426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 18338222 - 18338309
Alignment:
| Q |
30 |
tcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggt |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
18338222 |
tcaatgtgcattacatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggt |
18338309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 7407341 - 7407550
Alignment:
| Q |
4 |
gaattatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttct |
103 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7407341 |
gaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttct |
7407440 |
T |
|
| Q |
104 |
tttggtccaatggtactcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatact |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7407441 |
tttggtccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatact |
7407540 |
T |
|
| Q |
204 |
tcctctgatg |
213 |
Q |
| |
|
|||||||||| |
|
|
| T |
7407541 |
tcctctgatg |
7407550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 14899263 - 14899157
Alignment:
| Q |
8 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
107 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
14899263 |
tatattgtcacaaaaattcttttcaatgtgcataacatccagattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttg |
14899164 |
T |
|
| Q |
108 |
gtccaat |
114 |
Q |
| |
|
||||||| |
|
|
| T |
14899163 |
gtccaat |
14899157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 22329955 - 22329740
Alignment:
| Q |
4 |
gaattatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttct |
103 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
22329955 |
gaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaaaatacttct |
22329856 |
T |
|
| Q |
104 |
tttggtccaatggtactcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatact |
203 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22329855 |
tttggtccaatggtgctcattaccgtattgtaggtgtctgactcttttgccaacatttgtgaatttcaaaagtcctagttcattgactctacggtatact |
22329756 |
T |
|
| Q |
204 |
tcctctgatgatgtcc |
219 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22329755 |
tcctctgatgatgtcc |
22329740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 54953877 - 54954063
Alignment:
| Q |
33 |
atgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggtactcgttaccgtatt |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54953877 |
atgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggtgctcgttaccgtatt |
54953976 |
T |
|
| Q |
133 |
gtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatacttcctctgatgatgtcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54953977 |
gtgggtgtctgactcttttgccaacatctgtgaacttcaaaagtcctagttcattgactctacggtatacttcctctgataatgtcc |
54954063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 14808392 - 14808286
Alignment:
| Q |
8 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
107 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
14808392 |
tatattgtcacaaaaattcttttcaatgtgcataacatccagattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttg |
14808293 |
T |
|
| Q |
108 |
gtccaat |
114 |
Q |
| |
|
||||||| |
|
|
| T |
14808292 |
gtccaat |
14808286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 38969636 - 38969723
Alignment:
| Q |
30 |
tcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggt |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
38969636 |
tcaatgtgcattacatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggt |
38969723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 10799907 - 10799995
Alignment:
| Q |
12 |
ttgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatact |
100 |
Q |
| |
|
|||||| |||| || || ||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || ||||| |
|
|
| T |
10799907 |
ttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatact |
10799995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 1935132 - 1935238
Alignment:
| Q |
8 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
107 |
Q |
| |
|
|||||||||| |||| || || ||||| ||||| ||||| ||||| || || |||| |||||||||||| || | | |||||| || ||||||||||| |
|
|
| T |
1935132 |
tatattgtcaaaaaaattcttctcaatatgcatgacatcgagattgtgccttaatagattatctttccaatatagcaaatcccaaaaaatacttcttttt |
1935231 |
T |
|
| Q |
108 |
gtccaat |
114 |
Q |
| |
|
||||||| |
|
|
| T |
1935232 |
gtccaat |
1935238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 23010643 - 23010434
Alignment:
| Q |
4 |
gaattatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttct |
103 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23010643 |
gaattatattgtcacaaaagttcttttcaatgtgcataacatcaaaattatgtctcagtaaattatctttccagtaagggagatcccagaagatactcct |
23010544 |
T |
|
| Q |
104 |
tttggtccaatggtactcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatact |
203 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23010543 |
tttggtccaatggtgctcgttaccgtattttgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatact |
23010444 |
T |
|
| Q |
204 |
tcctctgatg |
213 |
Q |
| |
|
|||||||||| |
|
|
| T |
23010443 |
tcctctgatg |
23010434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 20149225 - 20149119
Alignment:
| Q |
8 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
107 |
Q |
| |
|
|||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| || ||||| || |||||||||||| |
|
|
| T |
20149225 |
tatattgtcaaaaaaattcttttcaatgtgcataacatcaagattatgtctcagtaaattgtctttccaataaggaaggtcccaaaaaatacttcttttg |
20149126 |
T |
|
| Q |
108 |
gtccaat |
114 |
Q |
| |
|
|||||| |
|
|
| T |
20149125 |
atccaat |
20149119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 33905278 - 33905365
Alignment:
| Q |
30 |
tcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggt |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
33905278 |
tcaatgtgcattacatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggt |
33905365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 31335 - 31441
Alignment:
| Q |
8 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
107 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
31335 |
tatattgtcacaaaaattcttttcaatgtgcataacatccagattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttg |
31434 |
T |
|
| Q |
108 |
gtccaat |
114 |
Q |
| |
|
||||||| |
|
|
| T |
31435 |
gtccaat |
31441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 358651 - 358757
Alignment:
| Q |
8 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
107 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| | ||||||||| | |||||| ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
358651 |
tatattgtcacaaaaattcttttcaatgtgcataacatccatattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttg |
358750 |
T |
|
| Q |
108 |
gtccaat |
114 |
Q |
| |
|
||||||| |
|
|
| T |
358751 |
gtccaat |
358757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 2064162 - 2064267
Alignment:
| Q |
8 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
107 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
2064162 |
tatattgtcacaaaaattcttttcaatgtgcataacatcaagattatgtcttagtaaattgtctttccagtaagggaggtccca-aaaatacttcttttg |
2064260 |
T |
|
| Q |
108 |
gtccaat |
114 |
Q |
| |
|
||||||| |
|
|
| T |
2064261 |
gtccaat |
2064267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 37571104 - 37571186
Alignment:
| Q |
30 |
tcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtcca |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
37571104 |
tcaatgtgcattacatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtcca |
37571186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 22123638 - 22123743
Alignment:
| Q |
12 |
ttgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtcc |
111 |
Q |
| |
|
|||||| |||| || || ||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| | ||| || |||||| |||| |||| |
|
|
| T |
22123638 |
ttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaataggggaggttccaaaatatacttttttttgtcc |
22123737 |
T |
|
| Q |
112 |
aatggt |
117 |
Q |
| |
|
| |||| |
|
|
| T |
22123738 |
agtggt |
22123743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 21596978 - 21596873
Alignment:
| Q |
8 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
107 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| ||||||||||| | |||||| ||||||||| ||||||||||| | || |||||||||||| |
|
|
| T |
21596978 |
tatattgtcacaaaaattcttttcaatgtgcataacatccagattatgtcttagtaaattgtctttccag-aagggagatccaaaaaaatacttcttttg |
21596880 |
T |
|
| Q |
108 |
gtccaat |
114 |
Q |
| |
|
||||||| |
|
|
| T |
21596879 |
gtccaat |
21596873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 4965435 - 4965522
Alignment:
| Q |
30 |
tcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggt |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
4965435 |
tcaatgtgcattacatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggt |
4965522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 35596890 - 35596803
Alignment:
| Q |
30 |
tcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggt |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
35596890 |
tcaatgtgcattacatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggt |
35596803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 37367761 - 37367837
Alignment:
| Q |
30 |
tcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttctttt |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||| | || ||||||||||| || | ||| ||||| || ||||| ||||| |
|
|
| T |
37367761 |
tcaatgtgcattacatcaagattatgtctgagcaagttatctttccaatatgagaggtcccaaaatatactcctttt |
37367837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 14322657 - 14322553
Alignment:
| Q |
8 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
107 |
Q |
| |
|
|||||||||| |||| || |||||||||||||||||||||||||||||||| | |||||| |||||| ||||||| || |||||||| |||||||||||| |
|
|
| T |
14322657 |
tatattgtcaaaaaaattcttttcaatgtgcataacatcaagattatgtcttagtaaattgtctttcaagtaaggaaggtcccagaaaatacttcttttg |
14322558 |
T |
|
| Q |
108 |
gtcca |
112 |
Q |
| |
|
|||| |
|
|
| T |
14322557 |
atcca |
14322553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 28498176 - 28498239
Alignment:
| Q |
4 |
gaattatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaatt |
67 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28498176 |
gaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaatt |
28498239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 28955223 - 28955118
Alignment:
| Q |
12 |
ttgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtcc |
111 |
Q |
| |
|
|||||| |||| || || ||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || |||||| |||| |||| |
|
|
| T |
28955223 |
ttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacttttttttgtcc |
28955124 |
T |
|
| Q |
112 |
aatggt |
117 |
Q |
| |
|
| |||| |
|
|
| T |
28955123 |
agtggt |
28955118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 23959275 - 23959171
Alignment:
| Q |
8 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
107 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||||||||||||||||||| | |||||| |||||| ||||||| || |||||||| |||||||||||| |
|
|
| T |
23959275 |
tatattgtcaaaaatattcttttcaatgtgcataacatcaagattatgtcttagtaaattgtctttcaagtaaggaaggtcccagaaaatacttcttttg |
23959176 |
T |
|
| Q |
108 |
gtcca |
112 |
Q |
| |
|
|||| |
|
|
| T |
23959175 |
atcca |
23959171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 57756 - 57861
Alignment:
| Q |
12 |
ttgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtcc |
111 |
Q |
| |
|
|||||| |||| || || ||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || ||||| |||| |||| |
|
|
| T |
57756 |
ttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatactcttttttgtcc |
57855 |
T |
|
| Q |
112 |
aatggt |
117 |
Q |
| |
|
| |||| |
|
|
| T |
57856 |
agtggt |
57861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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