View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0965_high_5 (Length: 577)
Name: NF0965_high_5
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 140 - 569
Target Start/End: Original strand, 56401155 - 56401584
Alignment:
| Q |
140 |
gcatactaaaccctgtccccccaaaatgcgtgtaatataggagatgtttannnnnnnggggggtgctgtattagaatcaaactgttatgtatgtacacgc |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56401155 |
gcatactaaaccctgtccccccaaaatgcgtgtaatataggagatgtttatttttttggggggtgctgtattagaatcaaactgttatgtatgtacacgc |
56401254 |
T |
|
| Q |
240 |
aataagcattgtataatcgatgctcattttcatatcattataggctccctgttttagtcttatttcatttcttggttgaattcaaaacaagatggtatga |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56401255 |
aataagcattgtataatcgatgctcattttcatatcattataggctccctgttttagtcttatttcatttcttggttgaattcaaaacaagatggtatga |
56401354 |
T |
|
| Q |
340 |
cttagacattttgtgtgtgcaccaagttaattttttattactacctacagccaagattttaagccgatggatggactcctctagaatccagaaacataaa |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
56401355 |
cttagacattttgtgtgtgcaccaagttaattttttattactacctacaaccaagattttaagcccatggatggattcctctagaatccagaaacataaa |
56401454 |
T |
|
| Q |
440 |
ccctaaaccagagttcctgtcagagcttattttccgcgaccaccgtgccagaatgcgtctcctccgtgccggagcacctatctgcagccaattgcttaag |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56401455 |
ccctaaaccagagttcctgtcagagcttattttccgcgaccaccgtgccagaatgcgtctcctccgtgccggagcacctatctgcagccaattgcttaag |
56401554 |
T |
|
| Q |
540 |
aaggttaaaaaatatctatttattcatctc |
569 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
56401555 |
aaggttaaaaaatatctatttattcttctc |
56401584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 56401036 - 56401091
Alignment:
| Q |
30 |
cattggagtgtcaagcaagaacaatgtgtttgtaaatagtcaagagagtattgcaa |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56401036 |
cattggagtgtcaagcaagaacaatgtgtttgtaaatagtcaagagagtattgcaa |
56401091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University