View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0965_high_6 (Length: 475)
Name: NF0965_high_6
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_high_6 |
 | |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 30 - 464
Target Start/End: Complemental strand, 4302135 - 4301701
Alignment:
| Q |
30 |
attagcacagctctatctgtcattcaattcaacacatcagctgcaacattcttggcctcaatctcattgactctttgttctctaatcggagcttggattg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4302135 |
attagcacagctctatctgtcattcaattcaacacatcagctgcaacattcttggcctcaatctcattgactctttgttctctaatcggagcttggattg |
4302036 |
T |
|
| Q |
130 |
ccaatacttcaaatattctcttccaaagtcaattaatctacggtgacacaagtgcaaccgcagtttccatcaagtacatttgcttattaacctgtttcct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4302035 |
ccaatacttcaaatattctcttccaaagtcaattaatctacggtgacacaagtgcaaccgcagtttccatcaagtacatttgcttattaacctgtttcct |
4301936 |
T |
|
| Q |
230 |
ccttgctttctcatgctttattcaatcagcaagacactttgttcatgcaaactatttgataagcacaccggatagttttgttcctatcagtagtgtggaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4301935 |
ccttgctttctcatgctttattcaatcagcaagacactttgttcatgcaaactatttgataagcacaccggatagttttgttcctatcagtagtgtggaa |
4301836 |
T |
|
| Q |
330 |
ttagcagtcataaggggtggtgatttttggtcactcggtcttcgagctctttattttgcacttaacttgctgctttggttttttggtccaatacccatgt |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4301835 |
ttagcagtcataaggggtggtgatttttggtcactcggtcttcgagctctttattttgcacttaacttgctgctttggttttttggtccaatatccatgt |
4301736 |
T |
|
| Q |
430 |
ttatttgctcattggttatggttcttgttcttcat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
4301735 |
ttatttgctcattggttatggttcttgttcttcat |
4301701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 51 - 464
Target Start/End: Complemental strand, 33101567 - 33101154
Alignment:
| Q |
51 |
attcaattcaacacatcagctgcaacattcttggcctcaatctcattgactctttgttctctaatcggagcttggattgccaatacttcaaatattctct |
150 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
33101567 |
attcaattcaacacatcagcggcaacattcttggcctcagtctctttgactctttgttctctaattggagcttggattgctaatacttcaaatattttct |
33101468 |
T |
|
| Q |
151 |
tccaaagtcaattaatctacggtgacacaagtgcaaccgcagtttccatcaagtacatttgcttattaacctgtttcctccttgctttctcatgctttat |
250 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33101467 |
tccagagtcaattaatctatggtgacacgagtgcaaccgcagtttccatcaagtacatttgtttattaacctgtttccttcttgctttctcatgctttat |
33101368 |
T |
|
| Q |
251 |
tcaatcagcaagacactttgttcatgcaaactatttgataagcacaccggatagttttgttcctatcagtagtgtggaattagcagtcataaggggtggt |
350 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33101367 |
tcaatatgcaagacgctttgttcatgcaaactatttgataagcacaccagatagttttgttcctattagtagtgtggaattagcagtcataaggggtggt |
33101268 |
T |
|
| Q |
351 |
gatttttggtcactcggtcttcgagctctttattttgcacttaacttgctgctttggttttttggtccaatacccatgtttatttgctcattggttatgg |
450 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33101267 |
gatttttggtcactcggtcttcaagctctttaatttgcacttaacttgctgctttggttttttggtccaatacccatgtttatttgctcattggttatgg |
33101168 |
T |
|
| Q |
451 |
ttcttgttcttcat |
464 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
33101167 |
ttcatgttcttcat |
33101154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 121 - 464
Target Start/End: Complemental strand, 87485 - 87142
Alignment:
| Q |
121 |
cttggattgccaatacttcaaatattctcttccaaagtcaattaatctacggtgacacaagtgcaaccgcagtttccatcaagtacatttgcttattaac |
220 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||| ||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87485 |
cttggactgctaatacttcaaatattttcttccagagtcaataaatctatggtgacacgagggcaaccgcagtttccatcaagtacatttgcttattaac |
87386 |
T |
|
| Q |
221 |
ctgtttcctccttgctttctcatgctttattcaatcagcaagacactttgttcatgcaaactatttgataagcacaccggatagttttgttcctatcagt |
320 |
Q |
| |
|
|||| |||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
87385 |
ctgtgtccttcttggtttctcatgctttattcaatctgcaagacacttttttcatgcaaactatttgataagcacaccagatagttttgttcctattagt |
87286 |
T |
|
| Q |
321 |
agtgtggaattagcagtcataaggggtggtgatttttggtcactcggtcttcgagctctttattttgcacttaacttgctgctttggttttttggtccaa |
420 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||| || | |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
87285 |
agtgtggaattagcagtcataagaggtggtgatttttggtcactcgatcttcaaggtatttattttgcacttaactcgctgctttggttttttggtccaa |
87186 |
T |
|
| Q |
421 |
tacccatgtttatttgctcattggttatggttcttgttcttcat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
87185 |
tacccatgtttatttgctcattggttatggttcatgttcttcat |
87142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 92383 - 92309
Alignment:
| Q |
51 |
attcaattcaacacatcagctgcaacattcttggcctcaatctcattgactctttgttctctaatcggagcttgg |
125 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |
|
|
| T |
92383 |
attcgattcaacacatcagcggcaacattcttggcctcagtctctttgactctttgttctctaattggagcttgg |
92309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University