View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0965_low_10 (Length: 424)
Name: NF0965_low_10
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 4265971 - 4265587
Alignment:
| Q |
11 |
caaaggggtgatactaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacag |
110 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265971 |
caaaggggtaattctaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacag |
4265872 |
T |
|
| Q |
111 |
catgatgtgaagtaataccaattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttagg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
4265871 |
catgatgtgaagtaataccaattgaaaatccatagtttggaaaaagagtaacttgaagagccaaaatagaagcttgatcatgagaaatattcaagttagg |
4265772 |
T |
|
| Q |
211 |
taaaagatcatgaatttgtttagctttagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagtgtttccc |
310 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4265771 |
taaaagatcatgaatttgtttagcttcagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagggtttccc |
4265672 |
T |
|
| Q |
311 |
ttaatgaatttgatgattggcttgtgagaatcatgaggccaaatgagatgacccaaaagaggataaaagtgagaaagtgcaatgg |
395 |
Q |
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| T |
4265671 |
ttgatgaatttgatgattggcttgtgagaatcattaggccaagtgagatgacccaaaagaggataaaagtaagaaagtgcaatgg |
4265587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 4260425 - 4260041
Alignment:
| Q |
11 |
caaaggggtgatactaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacag |
110 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260425 |
caaaggggtaatactaattcagatacttcaatttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacag |
4260326 |
T |
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| Q |
111 |
catgatgtgaagtaataccaattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttagg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |
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| T |
4260325 |
catgatgtgaagtaataccaattgaaaatccatagtttggaaaaaaagtaacttgaagagccaaaaaagaagcttgatcatgagaaatattcaagttagg |
4260226 |
T |
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| Q |
211 |
taaaagatcatgaatttgtttagctttagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagtgtttccc |
310 |
Q |
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||||| ||||||||| ||| |||||| || |||||||||||| || | ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
4260225 |
taaaaaatcatgaatctgtgtagcttcagaaagattcttaccagagaaatgattgaaatcagcatgagattcagctacggtaagtgaaagagtgtttcct |
4260126 |
T |
|
| Q |
311 |
ttaatgaatttgatgattggcttgtgagaatcatgaggccaaatgagatgacccaaaagaggataaaagtgagaaagtgcaatgg |
395 |
Q |
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| T |
4260125 |
ttgatgaatttaatgattggcttgtgagaatcatgaggccaaatgagatgacccaaaagaggataaaagtgagaaagtgcaatgg |
4260041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 389
Target Start/End: Original strand, 4289752 - 4290130
Alignment:
| Q |
11 |
caaaggggtgatactaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacag |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289752 |
caaaggggtgatactaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacag |
4289851 |
T |
|
| Q |
111 |
catgatgtgaagtaataccaattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttagg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |
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| T |
4289852 |
catgatgtgaagtaataccaattgaaaatccatagtttggaaaaatggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttagg |
4289951 |
T |
|
| Q |
211 |
taaaagatcatgaatttgtttagctttagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagtgtttccc |
310 |
Q |
| |
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||||||||||||||||||| |||||| || |||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4289952 |
taaaagatcatgaatttgtgtagcttcagaaagattcttaccagataaatgattgaaatcagcatgagattcagctatggtaagtgaaagagtgtttcct |
4290051 |
T |
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| Q |
311 |
ttaatgaatttgatgattggcttgtgagaatcatgaggccaaatgagatgacccaaaagaggataaaagtgagaaagtg |
389 |
Q |
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| |||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4290052 |
cttatgaatttaatgattggtttgtgagaatcattaggccaaatgagatgacccaaaagaggataaaagtgagaaagtg |
4290130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 27 - 380
Target Start/End: Original strand, 4298352 - 4298705
Alignment:
| Q |
27 |
attcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaat |
126 |
Q |
| |
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||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298352 |
attcagatatttcctttccaatatttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaat |
4298451 |
T |
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| Q |
127 |
accaattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatgaatt |
226 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
4298452 |
accaattgaaaatccatagtttggaaaaacggtaacttgaagagccaaaacataagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatt |
4298551 |
T |
|
| Q |
227 |
tgtttagctttagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagtgtttcccttaatgaatttgatga |
326 |
Q |
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||| |||||| || | |||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||| |
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| T |
4298552 |
tgtgtagcttcagaaggattcttaccagatagataattgaaatcagaatcagattcagctatggtaagtgaaagagtgtttctcttgaagaatttgatga |
4298651 |
T |
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| Q |
327 |
ttggcttgtgagaatcatgaggccaaatgagatgacccaaaagaggataaaagt |
380 |
Q |
| |
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|||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
4298652 |
ttggtttgtgagaatcattaggccaagtgagatgacccaaaagaggataaaagt |
4298705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 98 - 282
Target Start/End: Original strand, 4285109 - 4285293
Alignment:
| Q |
98 |
ccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaa |
197 |
Q |
| |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |
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| T |
4285109 |
ccatctaaaacagcatgatgtgaagtaatgcccattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaa |
4285208 |
T |
|
| Q |
198 |
tattcaagttaggtaaaagatcatgaatttgtttagctttagtaagattcttacctgaaagatgattgaaatcagcatcagattc |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||| | |||||||||| | || | |||||||||| |||||| |||||| |
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|
| T |
4285209 |
tattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
4285293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 4285054 - 4285111
Alignment:
| Q |
12 |
aaaggggtgatactaattcagatacttcattttcaagctttctacataggtaagccca |
69 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4285054 |
aaaggggtgattctaattcagaaacttcattttcaagctttctacataggtaagccca |
4285111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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