View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0965_low_11 (Length: 414)
Name: NF0965_low_11
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 52 - 404
Target Start/End: Original strand, 2272436 - 2272788
Alignment:
| Q |
52 |
agacttctctggtttggctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgttta |
151 |
Q |
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| T |
2272436 |
agacttctctggtttggctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgttta |
2272535 |
T |
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| Q |
152 |
attcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggctcgg |
251 |
Q |
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| T |
2272536 |
attcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggctcgg |
2272635 |
T |
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| Q |
252 |
tgtctaattttaccattctttttcataaatagcagaagaatgaataatgtttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttga |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272636 |
tgtctaattttaccattctttttcataaatagcagaagaatgaataatgcttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttga |
2272735 |
T |
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| Q |
352 |
tgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgtg |
404 |
Q |
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| T |
2272736 |
tgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgtg |
2272788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
| Q |
148 |
tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa |
222 |
Q |
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|||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |||||| |||||| |
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| T |
40772552 |
tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa |
40772478 |
T |
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