View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0965_low_13 (Length: 408)

Name: NF0965_low_13
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0965_low_13
NF0965_low_13
[»] chr5 (9 HSPs)
chr5 (253-387)||(41900181-41900315)
chr5 (166-364)||(32268817-32269021)
chr5 (83-156)||(32250396-32250470)
chr5 (83-145)||(32255881-32255943)
chr5 (83-156)||(32264927-32265000)
chr5 (339-395)||(32268762-32268818)
chr5 (46-81)||(32264762-32264797)
chr5 (263-303)||(41886296-41886336)
chr5 (46-82)||(32255711-32255747)
[»] chr4 (8 HSPs)
chr4 (83-156)||(28719574-28719647)
chr4 (327-390)||(6007662-6007725)
chr4 (322-387)||(55907434-55907499)
chr4 (263-311)||(1488824-1488872)
chr4 (328-383)||(2525761-2525816)
chr4 (262-307)||(1537250-1537295)
chr4 (323-388)||(2168015-2168080)
chr4 (326-370)||(2625367-2625411)
[»] chr1 (3 HSPs)
chr1 (83-156)||(23204849-23204922)
chr1 (29-82)||(23203493-23203547)
chr1 (322-390)||(33161430-33161498)
[»] chr7 (4 HSPs)
chr7 (320-394)||(15091347-15091421)
chr7 (322-381)||(10168806-10168865)
chr7 (322-381)||(10176331-10176390)
chr7 (259-300)||(10616209-10616250)
[»] chr3 (2 HSPs)
chr3 (320-390)||(513426-513496)
chr3 (263-305)||(51120330-51120372)
[»] chr2 (2 HSPs)
chr2 (322-387)||(1036176-1036241)
chr2 (263-311)||(45244526-45244574)
[»] chr8 (2 HSPs)
chr8 (322-385)||(32152208-32152271)
chr8 (263-308)||(17642614-17642659)
[»] chr6 (1 HSPs)
chr6 (329-390)||(6395772-6395833)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 253 - 387
Target Start/End: Original strand, 41900181 - 41900315
Alignment:
Q  253 ttctggttcatatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacgacgacaatgtatgcttgaaatctctctcactcgtctccaaacag 352  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||   | |||||||||||||||||||||||||||||||    
T  41900181 ttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagacgataatcactacttgaaatctctctcactcgtctccaaacag 41900280  T
Q  353 ttgctctccatctccaacaatcttcgattctctct 387  Q
    || ||||||||| |||||| |||||||||||||||    
T  41900281 tttctctccatcaccaacactcttcgattctctct 41900315  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 166 - 364
Target Start/End: Complemental strand, 32269021 - 32268817
Alignment:
Q  166 cactcatctggcaactatgaagtccactcaaacaaaaagaagaagtagaacat-------cagtgatgcaaaaagaagaa---aatcaatgatatatttc 255  Q
    ||||||||||  ||||||| ||||||||   |||||||||||||| |||||||       ||||||||||||||||||||   ||||||||||    |||    
T  32269021 cactcatctgctaactatggagtccacttcgacaaaaagaagaagaagaacattgcggtccagtgatgcaaaaagaagaagaaaatcaatgat----ttc 32268926  T
Q  256 tggttcatatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacgacgacaatgtatgcttgaaatctctctcactcgtctccaaacagttg 355  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| | || ||| |||||  ||||||||||||||||||  ||||||||||||||||     
T  32268925 tggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtctccaaacagtta 32268826  T
Q  356 ctctccatc 364  Q
    |||||||||    
T  32268825 ctctccatc 32268817  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 32250396 - 32250470
Alignment:
Q  83 aatatgattaattgggctctca-gagacaaacaagagttcattgatatggttgaaactgtcttccgtggtgcaag 156  Q
    |||||||||||||||||||| | ||||||||||||||||| ||||||  ||||||||||||||||||||| ||||    
T  32250396 aatatgattaattgggctctgaagagacaaacaagagttcgttgataccgttgaaactgtcttccgtggttcaag 32250470  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 32255881 - 32255943
Alignment:
Q  83 aatatgattaattgggctctcagagacaaacaagagttcattgatatggttgaaactgtcttc 145  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||||    
T  32255881 aataagattaattgggttctcagagacaaacaagagttcgttgataccgttgaaactgtcttc 32255943  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 32264927 - 32265000
Alignment:
Q  83 aatatgattaattgggctctcagagacaaacaagagttcattgatatggttgaaactgtcttccgtggtgcaag 156  Q
    |||| ||||||||||| | |||||||||||||||||||| ||||||  ||||||||||||||| | ||||||||    
T  32264927 aataagattaattgggttatcagagacaaacaagagttcgttgataccgttgaaactgtcttctgcggtgcaag 32265000  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 32268818 - 32268762
Alignment:
Q  339 tcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcacagtct 395  Q
    |||||||||||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  32268818 tcgtctccaaacagttactctccatcaccaaccgtcttcgattctctctcacagtct 32268762  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 32264762 - 32264797
Alignment:
Q  46 gataaaattataagatgcaaataattgcaagtaact 81  Q
    ||||||||||||||||||||||||||||||||||||    
T  32264762 gataaaattataagatgcaaataattgcaagtaact 32264797  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 41886296 - 41886336
Alignment:
Q  263 tatttaccagatgagtgttgcgaatgtgtcttcaaattcct 303  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 32255711 - 32255747
Alignment:
Q  46 gataaaattataagatgcaaataattgcaagtaacta 82  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  32255711 gataaaattatatgatgcaagtaattgcaagtaacta 32255747  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 28719574 - 28719647
Alignment:
Q  83 aatatgattaattgggctctcagagacaaacaagagttcattgatatggttgaaactgtcttccgtggtgcaag 156  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  28719574 aataagattaattgggctctcagagacaaacaagagttcattgatatcgttgaaactgtcttccatggtgcaag 28719647  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 6007725 - 6007662
Alignment:
Q  327 aatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcac 390  Q
    |||||||||| |||||||| |||||||| ||||||||| |||||| ||| ||||||||||||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcac 6007662  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 387
Target Start/End: Original strand, 55907434 - 55907499
Alignment:
Q  322 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctct 387  Q
    ||||||||||||||||  ||||||||||||||| |||||  || |||||| |||||||||||||||    
T  55907434 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 55907499  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 1488824 - 1488872
Alignment:
Q  263 tatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacgacg 311  Q
    |||||||| |||||||| || ||||||||| ||||||||||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcctcaacgacg 1488872  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 2525816 - 2525761
Alignment:
Q  328 atctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattct 383  Q
    ||||||||| |||||||| |||||||| || |||||| |||||| |||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattct 2525761  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 1537250 - 1537295
Alignment:
Q  262 atatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaac 307  Q
    ||||||||| ||||||||||| |||||||| |||| ||||||||||    
T  1537250 atatttacctgatgagtgttgggaatgtgtattcagattcctcaac 1537295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 2168080 - 2168015
Alignment:
Q  323 ttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctc 388  Q
    ||||| ||||||||| | |||||||| ||||| || |||||| |||| | ||||||||||||||||    
T  2168080 ttgaagtctctctcagttgtctccaagcagtttctgtccatcaccaatagtcttcgattctctctc 2168015  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 2625367 - 2625411
Alignment:
Q  326 aaatctctctcactcgtctccaaacagttgctctccatctccaac 370  Q
    ||||||||||| || ||||||||||| || |||||||||||||||    
T  2625367 aaatctctctcgctagtctccaaacattttctctccatctccaac 2625411  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 23204849 - 23204922
Alignment:
Q  83 aatatgattaattgggctctcagagacaaacaagagttcattgatatggttgaaactgtcttccgtggtgcaag 156  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  23204849 aatatgattaattggactctcagagacgaacaagagttcattgatatggttgaaactgtcttctgtggtgcaag 23204922  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 23203493 - 23203547
Alignment:
Q  29 accagctacacatacttgataaaattat-aagatgcaaataattgcaagtaacta 82  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23203493 accagctacacatacttgataaaattataaagatgcaaataattgcaagtaacta 23203547  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 33161498 - 33161430
Alignment:
Q  322 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcac 390  Q
    |||||| ||||| || ||||||||||||||||| ||||||||| | || | |||||||||||| |||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcactcac 33161430  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 394
Target Start/End: Original strand, 15091347 - 15091421
Alignment:
Q  320 tgcttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcacagtc 394  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||| |||||| ||||| ||| ||||||| ||||    
T  15091347 tgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctctcagagtc 15091421  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 381
Target Start/End: Original strand, 10168806 - 10168865
Alignment:
Q  322 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgatt 381  Q
    |||||| ||||| || || |||||||||||||| ||||||||| |||||| |||||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgatt 10168865  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 381
Target Start/End: Original strand, 10176331 - 10176390
Alignment:
Q  322 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgatt 381  Q
    |||||| ||||| || || |||||||||||||| ||||||||| |||||| |||||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgatt 10176390  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 10616250 - 10616209
Alignment:
Q  259 ttcatatttaccagatgagtgttgcgaatgtgtcttcaaatt 300  Q
    |||||||||||| ||||||||||| |||||| ||||||||||    
T  10616250 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 513426 - 513496
Alignment:
Q  320 tgcttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcac 390  Q
    |||||||||||||||||   |||||| |||||||| ||||||||| |||||||||| ||||||||||||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctctcac 513496  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 51120330 - 51120372
Alignment:
Q  263 tatttaccagatgagtgttgcgaatgtgtcttcaaattcctca 305  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||    
T  51120330 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 51120372  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 387
Target Start/End: Original strand, 1036176 - 1036241
Alignment:
Q  322 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctct 387  Q
    ||||||||||||||||  ||||||||||||||| |||||  || |||||| |||||||||||||||    
T  1036176 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 1036241  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 45244526 - 45244574
Alignment:
Q  263 tatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacgacg 311  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  45244526 tatttacctgatgagtgttgggaatgtgtcttgaaattcctcaacgacg 45244574  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 32152271 - 32152208
Alignment:
Q  322 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctct 385  Q
    |||||| || ||||| ||||||||||||||||| ||||||||| |||||| ||| |||||||||    
T  32152271 cttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgattctct 32152208  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 17642614 - 17642659
Alignment:
Q  263 tatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacg 308  Q
    |||||||| ||||||||||| || | ||||||||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcctcaacg 17642659  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 6395833 - 6395772
Alignment:
Q  329 tctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcac 390  Q
    |||||||| ||||||||||| ||||| ||||||||| ||||  |||||||||| || |||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgattttcactcac 6395772  T

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