View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0965_low_15 (Length: 378)
Name: NF0965_low_15
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 370
Target Start/End: Complemental strand, 353144 - 352804
Alignment:
| Q |
30 |
atagtagtataagtgaccacattcgggggagcaattttgagcttgcatttcatagagaaggtcgtaaaccatgtcgaaattctgttcttgacaataacat |
129 |
Q |
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| T |
353144 |
atagtagtataagtgaccacattcgggggagcaattttgagcttgcatttcatagagaaggtcgtaaaccatgtcgaaattatgttcttgacaataacat |
353045 |
T |
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| Q |
130 |
tgaataatggtggaataacttataacacaagagcgacaaccatatcatttcatctcttggattgtccaatgtgcctcttcaagcggcggatattgcacca |
229 |
Q |
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| T |
353044 |
tgaataatggtggaataacttataacacaagagcgacaaccatatcatttcatctcttggattgtccaatgtgcctcttcaagcggcggatattgcacca |
352945 |
T |
|
| Q |
230 |
tccatgaataagtatgttaaacgtgtgggcgtttggagcaacataatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaa |
329 |
Q |
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| T |
352944 |
tccatgaataagtatgttaaatgtgtgggcgtttggagcaacataatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaa |
352845 |
T |
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| Q |
330 |
agagtatcaagcaacacattcatggattctgtattcatctc |
370 |
Q |
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| T |
352844 |
agagtatcaagcaacacattcatggattctgtattcttctc |
352804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 370
Target Start/End: Complemental strand, 10579924 - 10579584
Alignment:
| Q |
30 |
atagtagtataagtgaccacattcgggggagcaattttgagcttgcatttcatagagaaggtcgtaaaccatgtcgaaattctgttcttgacaataacat |
129 |
Q |
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| T |
10579924 |
atagtagtatatgtgaccacatttgggg-agcaattttgagcttgcatttcatcgagaagatcataaaccctgtcgaaattctgttcttgacaataacat |
10579826 |
T |
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| Q |
130 |
tgaataatggtggaataacttataacacaagagcgacaaccatatcatttcatctcttggattgtccaatgtgcctcttcaa-gcggcggatattgcacc |
228 |
Q |
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| T |
10579825 |
tgaatgatggtggaataacttataacgcaagggcgacaaccatatcctttcatctcttggattgtccaatgtgcctcttcaacacgtcggatattacacc |
10579726 |
T |
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| Q |
229 |
atccatgaataagtatgttaaacgtgtgggcgtttggagcaacataatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgca |
328 |
Q |
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| T |
10579725 |
atccatgaataagtatgttaaacgtgtgagcatttggagcaatgtaatgcttcagctccaagtaaatttcacgagcttgttcaacaaatttctctttaca |
10579626 |
T |
|
| Q |
329 |
aagagtatcaagcaacacattcatggattctgtattcatctc |
370 |
Q |
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| T |
10579625 |
tagagtatcaagcaacacattcatggattctgtattcttctc |
10579584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 30 - 370
Target Start/End: Complemental strand, 24578331 - 24577991
Alignment:
| Q |
30 |
atagtagtataagtgaccacattcgggggagcaattttgagcttgcatttcatagagaaggtcgtaaaccatgtcgaaattctgttcttgacaataacat |
129 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||||| |
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| T |
24578331 |
atagtagtatatgtgaccacattcgggg-agcaattttgagcttgcatttcatcgagaagatcataaaccctgtcgaaattctgttcttgacaataacat |
24578233 |
T |
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| Q |
130 |
tgaataatggtggaataacttataacacaagagcgacaaccatatcatttcatctcttggattgtccaatgtgcctcttcaa-gcggcggatattgcacc |
228 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
24578232 |
tgaatgatggtggaataacttataacacaagggcgacaaccatatcctttcatctcttggattgtccaatgtgcctcttcaacgcgtcggatattgcacc |
24578133 |
T |
|
| Q |
229 |
atccatgaataagtatgttaaacgtgtgggcgtttggagcaacataatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgca |
328 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24578132 |
atccatgaataagtatgttaaacgtgtgagcgtttggagcaatgtaatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttttctttgca |
24578033 |
T |
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| Q |
329 |
aagagtatcaagcaacacattcatggattctgtattcatctc |
370 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24578032 |
aagagtatcaagcaacacattcatggattctgtattcttctc |
24577991 |
T |
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