View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0965_low_16 (Length: 370)
Name: NF0965_low_16
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 8653358 - 8653016
Alignment:
| Q |
11 |
attacacactaactaaaaatttagtgatcgaaatatttcagtgtctgactctagtgataggtttagctactgattttttaaatcgatctctaagtcgatt |
110 |
Q |
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| T |
8653358 |
attacacactaactaaaaatttagtgatcgaaatatttcagtgtctgactctagtgataggtttagctactgattttttaaatggatctctaagtcaatt |
8653259 |
T |
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| Q |
111 |
attaaataaccttgtgatcgacttagagatccatttaaaaaacgtgtctaagtggatcgttaaattggtcactatatcacatcatcacagttttttgtag |
210 |
Q |
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| T |
8653258 |
attaaatgactttgtgatcgacttagagatccatttaaaaaacgcgtctaagtggatcgttaaattggtcactatatcacatcatcacagttttttgcag |
8653159 |
T |
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| Q |
211 |
tgacatatatatgtagcaataatgtgaacattatatgaaacatttcatgcattaatcattcattgaaattcaagctagtagtaaagtatactaaacaaag |
310 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653158 |
tgac----atatgtagcaataatgtgaacattatatgaaacatttcgtgcattaatcattcattgaaattcaagctagtagtaaagtatactaaacaaag |
8653063 |
T |
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| Q |
311 |
tatgaaaaatatacatgtatatttgaaattgcatgcagttctcagaa |
357 |
Q |
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| T |
8653062 |
tatgaaaaatatatatgtatatttgaaattgcatgcagttctcagaa |
8653016 |
T |
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