View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0965_low_17 (Length: 346)
Name: NF0965_low_17
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 27 - 328
Target Start/End: Complemental strand, 52340519 - 52340218
Alignment:
| Q |
27 |
caccgggatccaccaacaacttcttccttggtggcgcaggggtgagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttattt |
126 |
Q |
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| T |
52340519 |
caccgggatccaccaacaacttcttccttggcggcgcaggggtgagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttattt |
52340420 |
T |
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| Q |
127 |
gcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52340419 |
gcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggt |
52340320 |
T |
|
| Q |
227 |
agatacctctctcattgtcgtgggcatttttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaactataaaatattg |
326 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52340319 |
agatacctctctcattgtcatgggcaattttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaactataaaatattg |
52340220 |
T |
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| Q |
327 |
at |
328 |
Q |
| |
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|| |
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| T |
52340219 |
at |
52340218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 52334516 - 52334316
Alignment:
| Q |
27 |
caccgggatccaccaacaacttcttccttggtggcgcaggggtgagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttattt |
126 |
Q |
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|||| ||||||||||||||||||||||| || || ||||| | |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52334516 |
cacccggatccaccaacaacttcttcctcggcggtgcaggagagagaggcattcaaattcaagacaaattcgtcaaattcaccgccattggtgtttattt |
52334417 |
T |
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| Q |
127 |
gcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggt |
226 |
Q |
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| T |
52334416 |
gcaggatatcgctgttccatatcttgcagagaaatggaaggccagatctgctcatgaattaacggataccgttcccttcttcagagacatcgttacaggt |
52334317 |
T |
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| Q |
227 |
a |
227 |
Q |
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| T |
52334316 |
a |
52334316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 75 - 328
Target Start/End: Complemental strand, 9184664 - 9184411
Alignment:
| Q |
75 |
gtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttatttgcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacc |
174 |
Q |
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| T |
9184664 |
gtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttatttgcaggacatcgctattccatatcttgccgcgaaatggaagggtaaacc |
9184565 |
T |
|
| Q |
175 |
tcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggtagatacctctctcattgtcgtgggcatttttataaatttaatcataga |
274 |
Q |
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| T |
9184564 |
tcctcacaagttaacagaatccgttcccttcttcttggacattgttacaggtggatacctctctaattgtcatgggcatttttataaatttaatcataga |
9184465 |
T |
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| Q |
275 |
tggtacatattagtatcatacccatgcatgtccattaaactataaaatattgat |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9184464 |
tggtacatattagtatcatacccatgcatgtccattaaactataaaatattgat |
9184411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 9181106 - 9180917
Alignment:
| Q |
38 |
accaacaacttcttccttggtggcgcaggggtgagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttatttgcaagacatcg |
137 |
Q |
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|||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
9181106 |
accaacaacttcttccttggcggcacaggggctagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttatttgcaggatatcg |
9181007 |
T |
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| Q |
138 |
ctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggta |
227 |
Q |
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| T |
9181006 |
ctgttccatatcttgcagagaaatggaaggccaaatctgctcatgaattaacggataccgttcccttcttcagagacatcgttacaggta |
9180917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 9190347 - 9190295
Alignment:
| Q |
27 |
caccgggatccaccaacaacttcttccttggtggcgcaggggtgagaggtatc |
79 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9190347 |
caccgagatccaccaacaacttcttccttggcagcgcaggggtgagaggtatc |
9190295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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