View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0965_low_20 (Length: 333)
Name: NF0965_low_20
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 31 - 249
Target Start/End: Complemental strand, 36956282 - 36956064
Alignment:
| Q |
31 |
attttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaaga |
130 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||| |
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| T |
36956282 |
attttgagagtaaaagttaccaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaattgaactgaacaatgatattgtgatgaaga |
36956183 |
T |
|
| Q |
131 |
taatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataag |
230 |
Q |
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||||||| | || |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36956182 |
taatgaaaacatggaacattgcatgacatagattgtgtgcttttccttctgcttcacctggaacagctaaacatgctgctactgatgctgtgattataag |
36956083 |
T |
|
| Q |
231 |
tgttgaaacaattgtgagg |
249 |
Q |
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||||||||||||||||||| |
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| T |
36956082 |
tgttgaaacaattgtgagg |
36956064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 30 - 245
Target Start/End: Complemental strand, 36935429 - 36935214
Alignment:
| Q |
30 |
gattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaag |
129 |
Q |
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||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||| |
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| T |
36935429 |
gattttgagaggtaaagtcagcaattcagttaacccaaatgttgcccaaaagagtatgatggtagcactaatggaactgaacaatgatactgtgatgaag |
36935330 |
T |
|
| Q |
130 |
ataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataa |
229 |
Q |
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| T |
36935329 |
ataatgaaagcatgaaacattgtatgacatagattgtgtgcttttccttctgcttcacatggaacggctaaacatgctgctactgaagcagtgattataa |
36935230 |
T |
|
| Q |
230 |
gtgttgaaacaattgt |
245 |
Q |
| |
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|||||||||||||||| |
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| T |
36935229 |
gtgttgaaacaattgt |
36935214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 36948186 - 36947998
Alignment:
| Q |
51 |
caattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacatt |
150 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
36948186 |
caattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaataatgatattgtgatgaagataatgaatgcttgaaacatt |
36948087 |
T |
|
| Q |
151 |
gcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaac |
239 |
Q |
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|||||||| || |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
36948086 |
gcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctactgatgcagtgattataagggttgaaac |
36947998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 37069765 - 37069970
Alignment:
| Q |
43 |
aaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgctt |
142 |
Q |
| |
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||||||| ||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||| || |||||||||||||||||||||||||| |||| |
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| T |
37069765 |
aaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaaagctt |
37069864 |
T |
|
| Q |
143 |
gaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaacaat |
242 |
Q |
| |
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| |||||||||||||| || |||| ||||||||| || | ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
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| T |
37069865 |
ggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagtgttgaaaccaa |
37069964 |
T |
|
| Q |
243 |
tgtgag |
248 |
Q |
| |
|
|||||| |
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|
| T |
37069965 |
tgtgag |
37069970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 37079525 - 37079730
Alignment:
| Q |
43 |
aaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgctt |
142 |
Q |
| |
|
||||||| |||||||| || |||||| ||||||||||||||||||| |||| ||||||||||| || ||||||||||||||||| |||||||| | | |
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| T |
37079525 |
aaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaatataatgaaaacat |
37079624 |
T |
|
| Q |
143 |
gaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaacaat |
242 |
Q |
| |
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| |||||||||||||| || |||| ||||||||| || | ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| | |
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| T |
37079625 |
ggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagggttgaaaccaa |
37079724 |
T |
|
| Q |
243 |
tgtgag |
248 |
Q |
| |
|
|||||| |
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|
| T |
37079725 |
tgtgag |
37079730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 36971718 - 36971668
Alignment:
| Q |
189 |
tggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaac |
239 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36971718 |
tggaacaccaaaacatgctgctactgatgcagtgattataagtgttgaaac |
36971668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 31 - 245
Target Start/End: Original strand, 12493542 - 12493756
Alignment:
| Q |
31 |
attttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaaga |
130 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| || || |||||||||||||||| |
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| T |
12493542 |
attttgagagtaaaagttaccaattcagttaacccaagtgttgcccaaaagagtatgatagtagcactaatggaactgaacaacgatattgtgatgaaga |
12493641 |
T |
|
| Q |
131 |
taatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataag |
230 |
Q |
| |
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||||||| || || |||||||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
12493642 |
taatgaaagcatggaacattgcatgacataggctgtgtgcttttccttctgcttcacctggaacagctaaacatgctgctactgaagcagtgattataag |
12493741 |
T |
|
| Q |
231 |
tgttgaaacaattgt |
245 |
Q |
| |
|
||||||||||||||| |
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|
| T |
12493742 |
tgttgaaacaattgt |
12493756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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