View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0965_low_21 (Length: 325)
Name: NF0965_low_21
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 104 - 301
Target Start/End: Complemental strand, 43369082 - 43368885
Alignment:
| Q |
104 |
tttcatgtgtctgatgatcttacagaggaagagaaattagagcccattataaatgtcactaacgatccaagtatcaggcttttgaaccgattgtatgcca |
203 |
Q |
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| T |
43369082 |
tttcatgtgtctgatgatcttacagaggaagagaaattagagcccattataaatgtcactaacgatccaagtatcaggcttttgaaccgattgtatgcca |
43368983 |
T |
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| Q |
204 |
agaagaaaaaagaattacttgaagggcctcaaaggataaagaagaatgttgatgttgaagaagatcaacgttcacttgatgaccttttgtcttatatt |
301 |
Q |
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| T |
43368982 |
agaagaaaaaacaattacttgaagggcctcaaaggataaagaagaatgttgatgttgaagaagatcaacgttcacttgatgaccttttgtcttttatt |
43368885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 103 - 301
Target Start/End: Complemental strand, 43364935 - 43364737
Alignment:
| Q |
103 |
atttcatgtgtctgatgatcttacagaggaagagaaattagagcccattataaatgtcactaacgatccaagtatcaggcttttgaaccgattgtatgcc |
202 |
Q |
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| T |
43364935 |
atttcgtgtgcctgatgatcttaccgaggaagagaaattggagcccttgttaaacatcactgatgacccaagcatcaggcttttgaaccgcttgtatgcc |
43364836 |
T |
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| Q |
203 |
aagaagaaaaaagaattacttgaagggcctcaaaggataaagaagaatgttgatgttgaagaagatcaacgttcacttgatgaccttttgtcttatatt |
301 |
Q |
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| T |
43364835 |
aagaagagaagagaactacttaaagagcgtgaaagcataaagaagaatgttgatgttgaagaagatgaacgttcagttgacgaccttctgtcttttatt |
43364737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 24618134 - 24618245
Alignment:
| Q |
103 |
atttcatgtgtctgatgatcttacagaggaagagaaattagagcccattataaatgtcactaacgatccaagtatcaggcttttgaaccgattgtatgcc |
202 |
Q |
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| T |
24618134 |
atttcatttgcctgatgatcttatggaggaagagaaattggagcagatgttaaacataacttgcgatccaagtatcaggcttatgaactgcttgtatgca |
24618233 |
T |
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| Q |
203 |
aagaagaaaaaa |
214 |
Q |
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| T |
24618234 |
aagaagagaaaa |
24618245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 11367227 - 11367269
Alignment:
| Q |
167 |
gatccaagtatcaggcttttgaaccgattgtatgccaagaaga |
209 |
Q |
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| T |
11367227 |
gatccaaggataaggcttttgaaccgcttgtatgccaagaaga |
11367269 |
T |
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