View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0965_low_22 (Length: 322)
Name: NF0965_low_22
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 3874007 - 3874157
Alignment:
| Q |
79 |
agagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaaccttgtgaagctcttatccnnnnnnnctga |
178 |
Q |
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| T |
3874007 |
agagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaaccttgtgaagctcttatccaaaaaagctga |
3874106 |
T |
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| Q |
179 |
taaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagt |
229 |
Q |
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| T |
3874107 |
taaagatatgactaaaaccaatacaaaaagtaacattggtaaccataaagt |
3874157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 3884536 - 3884685
Alignment:
| Q |
79 |
agagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaaccttgtgaagctcttatccnnnnnnnctga |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3884536 |
agagaagaataagaatgaaaacaataccaccagaagaac-accaactctatgaatccaattacgatcaaaccttgtgaagctcttatctaaaaaagctga |
3884634 |
T |
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| Q |
179 |
taaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3884635 |
taaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagt |
3884685 |
T |
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