View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0965_low_23 (Length: 312)

Name: NF0965_low_23
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0965_low_23
NF0965_low_23
[»] chr2 (3 HSPs)
chr2 (30-293)||(2347853-2348123)
chr2 (200-293)||(2340156-2340249)
chr2 (63-140)||(2339954-2340032)
[»] chr4 (1 HSPs)
chr4 (217-293)||(36794417-36794493)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 30 - 293
Target Start/End: Original strand, 2347853 - 2348123
Alignment:
Q  30 gaaatactatcctttttacatgcttacttaccatcaatgaatattttatcagttcttgagttttactctataagctatcacttaatcttgaaaattccta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2347853 gaaatactatcctttttacatgcttacttaccatcaatgaatattttatcagttcttgagttttactctataagctatcacttaatcttgaaaattccta 2347952  T
Q  130 gttaaattcttcaaaagtattcttgacacgcatattttttaatctgattgcacggttggttgtgtcttct-----------------tttggttgtggtt 212  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||                 |||||||||||||    
T  2347953 gttaaattcttcaaaaatattcttgacacacatattttttaatctgattgcacggttggttgtgtcttcttttgaatatttattatgtttggttgtggtt 2348052  T
Q  213 ttcttttcagggtcctgtgaattatgtatgtctccattgtgttaagccaagtttgaggccactatccatggccatgtctac 293  Q
    |||||          |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2348053 ttctt----------tgtgaattatgtatgtctccattgtgttaaaccaagtttgaggccactatccatggccatgtctac 2348123  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 2340156 - 2340249
Alignment:
Q  200 tttggttgtggttttcttttcagggtcctgtgaattatgtatgtctccattgtgttaagccaagtttgaggccactatccatggccatgtctac 293  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||  ||||||| |||||||||||    
T  2340156 tttgcttgcggttttcttttcagggtccggtgaattatgtatgtcttcattgtgttaaaccaagtttgaggcctttatccatcgccatgtctac 2340249  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 2339954 - 2340032
Alignment:
Q  63 tcaatgaatattttatcagttcttgagttttactctataagct-atcacttaatcttgaaaattcctagttaaattctt 140  Q
    ||||||| |||||||||||||||||| | |||||||||||||| |||| || ||| |||||||||||||||||||||||    
T  2339954 tcaatgagtattttatcagttcttgaatattactctataagctaatcatttgatcatgaaaattcctagttaaattctt 2340032  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 36794493 - 36794417
Alignment:
Q  217 tttcagggtcctgtgaattatgtatgtctccattgtgttaagccaagtttgaggccactatccatggccatgtctac 293  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  36794493 tttcagggtcccgtgaattttgtatgtctccattgtgttaagccaagtttgaggccactatcaatggctatgtctac 36794417  T

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