View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0965_low_26 (Length: 287)
Name: NF0965_low_26
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 2 - 285
Target Start/End: Complemental strand, 44551528 - 44551242
Alignment:
| Q |
2 |
agtatggtgggaatcctattctcctatttatacacttaatttagttatata---ttttgaaactattttttcttttaattgttgagttttattgcaacca |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44551528 |
agtatggtgggaatcctattctcctatttatacacttaatttagttatatactattttgaaactattttttcttttaattgttgagttttactgcaacca |
44551429 |
T |
|
| Q |
99 |
atgcaaattgtacttgactcaaaaaatgcaaattataatcttcatttccacgtgttaatttaatatccccatccaatgtccaaactcatattaaatggaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44551428 |
atgcaaattgtacttgactcaaaaaatgcaaattataatcttcatttccacgtgttaatttaatatccccatccaaggtccaaactcatattaaatggaa |
44551329 |
T |
|
| Q |
199 |
tcatatgcaggtcatacaattttcttttgaactttctagacgcatataatgattgggggtatccaattctcctctcatatattcttt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44551328 |
tcatatgcaggtcatacaattttcttttgaactttctagacgcatataatgattgggggtatccaattctcctctcatatattcttt |
44551242 |
T |
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