View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0965_low_27 (Length: 281)

Name: NF0965_low_27
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0965_low_27
NF0965_low_27
[»] chr3 (2 HSPs)
chr3 (60-241)||(24219709-24219890)
chr3 (71-187)||(16350448-16350564)
[»] chr6 (35 HSPs)
chr6 (70-223)||(24887005-24887158)
chr6 (68-217)||(29928641-29928790)
chr6 (68-221)||(29902620-29902773)
chr6 (68-208)||(24711515-24711655)
chr6 (96-223)||(28927492-28927619)
chr6 (60-223)||(24272421-24272584)
chr6 (60-223)||(24890720-24890883)
chr6 (96-223)||(29349108-29349235)
chr6 (68-211)||(29881809-29881952)
chr6 (68-211)||(29908965-29909108)
chr6 (68-217)||(24264234-24264383)
chr6 (70-223)||(29073125-29073278)
chr6 (70-223)||(29105698-29105851)
chr6 (89-217)||(29886665-29886793)
chr6 (89-217)||(29897450-29897578)
chr6 (84-223)||(24730217-24730356)
chr6 (96-223)||(29366931-29367058)
chr6 (89-223)||(29834577-29834711)
chr6 (89-223)||(29866011-29866145)
chr6 (70-223)||(29211562-29211715)
chr6 (89-220)||(29945997-29946128)
chr6 (70-216)||(29084387-29084533)
chr6 (70-223)||(29893915-29894068)
chr6 (63-211)||(25450282-25450430)
chr6 (89-217)||(29905021-29905149)
chr6 (90-179)||(31000442-31000531)
chr6 (96-216)||(29098712-29098832)
chr6 (96-216)||(29115630-29115750)
chr6 (60-187)||(21161099-21161226)
chr6 (63-179)||(24934073-24934189)
chr6 (63-179)||(24941606-24941722)
chr6 (93-189)||(29876221-29876317)
chr6 (60-187)||(24739669-24739796)
chr6 (88-154)||(24726258-24726324)
chr6 (63-149)||(30578245-30578331)
[»] chr1 (5 HSPs)
chr1 (60-236)||(10129486-10129662)
chr1 (68-189)||(4260799-4260920)
chr1 (68-189)||(4264421-4264542)
chr1 (70-188)||(17250710-17250828)
chr1 (105-149)||(19489686-19489730)
[»] chr2 (1 HSPs)
chr2 (68-220)||(15063358-15063510)
[»] scaffold0054 (1 HSPs)
scaffold0054 (89-223)||(54204-54338)
[»] scaffold0237 (1 HSPs)
scaffold0237 (89-217)||(21711-21839)
[»] scaffold1840 (1 HSPs)
scaffold1840 (72-164)||(830-922)
[»] scaffold0572 (1 HSPs)
scaffold0572 (72-164)||(2652-2744)
[»] scaffold0014 (2 HSPs)
scaffold0014 (71-188)||(136771-136888)
scaffold0014 (71-187)||(105223-105339)
[»] chr4 (1 HSPs)
chr4 (63-200)||(44263070-44263207)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 60 - 241
Target Start/End: Original strand, 24219709 - 24219890
Alignment:
Q  60 taaagtattataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacacca 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||  |||||||||||||||||||||||||||    
T  24219709 taaagtattataagtgacaacagtaggacaaattctcttagcaaccatttcagaatagaaatcaaaagcatcgttaacaagtttatctttgcacacacca 24219808  T
Q  160 tcaataatcgtgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtctcagcatttctaaggcagcctttg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24219809 tcaataatcgtgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtctcagcatttctaaggcagcttttg 24219890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 16350564 - 16350448
Alignment:
Q  71 aagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgt 170  Q
    ||||||||||||| |||  |||||||||  ||| ||||||  |||||||| || | |||| | | || ||||||||||| |||| ||||||||| || ||    
T  16350564 aagtgacaacagtgggaggaattctctttacaatcatttctgaatataaaccataggcatcagttactagtttatctttacacaaaccatcaatgattgt 16350465  T
Q  171 gttgtacatcaccacat 187  Q
    | | ||||| |||||||    
T  16350464 gctatacattaccacat 16350448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 24887005 - 24887158
Alignment:
Q  70 taagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcg 169  Q
    ||||||| ||||  |||| |||||||||| || ||||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |    
T  24887005 taagtgataacatcaggagaaattctcttcgcgaccatttcagaatataaatcaaaagcatcattaacaagtttacctttgcacataccatcaataatgg 24887104  T
Q  170 tgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtctcagca 223  Q
    || ||||||| | ||||| | || |||||||||| ||||||| |||||||||||    
T  24887105 tgctgtacattatcacattaggttgaaccaatttgccatcaactcgtctcagca 24887158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 29928790 - 29928641
Alignment:
Q  68 tataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataat 167  Q
    |||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||| |||||    
T  29928790 tataagtgacaacattaggagaaattctctttgcaaccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcgataat 29928691  T
Q  168 cgtgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtc 217  Q
     || |||||||| ||||||||| |  |||| ||||| ||||||| |||||    
T  29928690 ggtattgtacattaccacatcaggctgaacaaattttccatcaaatcgtc 29928641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 29902773 - 29902620
Alignment:
Q  68 tataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataat 167  Q
    |||||||||||||| ||||| || ||||| ||| |||||||||| |||||||||||||||||| |||||||| |||| ||||||||| ||||||||||||    
T  29902773 tataagtgacaacattaggagaagttctcctagaaaccatttcaaaatataaatcaaaagcatcattaacaaatttacctttgcacataccatcaataat 29902674  T
Q  168 cgtgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtctcag 221  Q
    ||| || ||||| ||||||| | |  |||||||||||| |||||  ||||||||    
T  29902673 cgtattatacattaccacattaggctgaaccaatttccgatcaacacgtctcag 29902620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 24711655 - 24711515
Alignment:
Q  68 tataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataat 167  Q
    ||||||||||||||  ||| ||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||| |||||| | || |||||||||    
T  24711655 tataagtgacaacatcagggcaaattctcttagcagccatttcagaatataaatcaaatgcatcattaacaagtttatatttgcataaactatcaataat 24711556  T
Q  168 cgtgttgtacatcaccacatcaagtcgaaccaatttcccat 208  Q
     ||| ||||||| ||||||| | || |||||||||||||||    
T  24711555 tgtggtgtacattaccacattaggttgaaccaatttcccat 24711515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 28927492 - 28927619
Alignment:
Q  96 cttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatcaagtcga 195  Q
    ||||| |||||||||| |||||||||||||||| | |||||||||||||||||| |||| || |||||||||| |  ||||||| ||||||||| || ||    
T  28927492 cttagaaaccatttcagaatataaatcaaaagcttcattaacaagtttatctttacacatactatcaataatcatagtgtacattaccacatcaggttga 28927591  T
Q  196 accaatttcccatcaattcgtctcagca 223  Q
    |||||||||||||||| |||||||||||    
T  28927592 accaatttcccatcaactcgtctcagca 28927619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 24272421 - 24272584
Alignment:
Q  60 taaagtattataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacacca 159  Q
    ||||| ||||||||||  ||||  |||  |||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||  | |    
T  24272421 taaagcattataagtgttaacatcagggaaaattctcttagaaaccatttcagaatataaatcaaaagcatcattatcaagtttatctttgcacatgcta 24272520  T
Q  160 tcaataatcgtgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtctcagca 223  Q
    |||||||| ||||||||||| ||||  | | || ||| |||||| ||||||| |||||||||||    
T  24272521 tcaataatggtgttgtacattaccaagttaggttgaagcaatttaccatcaactcgtctcagca 24272584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 24890720 - 24890883
Alignment:
Q  60 taaagtattataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacacca 159  Q
    ||||| ||| ||||||| ||||  ||| |||||||||||||||||||||| | |||||||||||||||||| ||||||||| ||| ||||||||| |  |    
T  24890720 taaagcattgtaagtgaaaacatcagggcaaattctcttagcaaccatttgagaatataaatcaaaagcatcattaacaagcttagctttgcacatatta 24890819  T
Q  160 tcaataatcgtgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtctcagca 223  Q
    ||||||||| |||||||||| ||| ||| | |  |||| ||||||||||||| |||| ||||||    
T  24890820 tcaataatcatgttgtacattaccgcattaggctgaactaatttcccatcaactcgtttcagca 24890883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 29349108 - 29349235
Alignment:
Q  96 cttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatcaagtcga 195  Q
    ||||| |||||||||| |||||||||||||||| | ||||||||||||| |||||||||  | ||||||||| ||||||||||| ||||||| | || ||    
T  29349108 cttagaaaccatttcagaatataaatcaaaagcttcattaacaagtttaactttgcacatgctatcaataatggtgttgtacattaccacattaggttga 29349207  T
Q  196 accaatttcccatcaattcgtctcagca 223  Q
    |||||||| ||||||| |||||||||||    
T  29349208 accaatttaccatcaactcgtctcagca 29349235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 211
Target Start/End: Complemental strand, 29881952 - 29881809
Alignment:
Q  68 tataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataat 167  Q
    |||||||||||||| ||||| |||||||||| ||| |||||||| |||||||||||||||||| ||||||| |||||||||| ||||  | |||||||||    
T  29881952 tataagtgacaacattaggagaaattctctttgcagccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacatgctatcaataat 29881853  T
Q  168 cgtgttgtacatcaccacatcaagtcgaaccaatttcccatcaa 211  Q
    ||   ||||||| ||| |||||||  |||||||||| |||||||    
T  29881852 cgaactgtacattaccgcatcaagctgaaccaattttccatcaa 29881809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 211
Target Start/End: Complemental strand, 29909108 - 29908965
Alignment:
Q  68 tataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataat 167  Q
    |||||||||||||| ||||| |||||||||| ||| |||||||| |||||||||||||||||| ||||||| |||||||||| ||||  | |||||||||    
T  29909108 tataagtgacaacattaggagaaattctctttgcagccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacatgctatcaataat 29909009  T
Q  168 cgtgttgtacatcaccacatcaagtcgaaccaatttcccatcaa 211  Q
    ||   ||||||| ||| |||||||  |||||||||| |||||||    
T  29909008 cgaactgtacattaccgcatcaagctgaaccaattttccatcaa 29908965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 24264234 - 24264383
Alignment:
Q  68 tataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataat 167  Q
    |||||||||||| | | | | |||||||| ||| |||||||||| |||||||||||||||||| |||||||  ||||||||| |||| || |||||||||    
T  24264234 tataagtgacaatattggaagaaattctcctagaaaccatttcagaatataaatcaaaagcatcattaacatttttatctttacacatactatcaataat 24264333  T
Q  168 cgtgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtc 217  Q
    |||  ||||||| |||||||||||  |||||||||| ||||||| |||||    
T  24264334 cgtactgtacattaccacatcaagctgaaccaattttccatcaactcgtc 24264383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 29073278 - 29073125
Alignment:
Q  70 taagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcg 169  Q
    ||||| ||||||  |||| |||||| || || |||||||||| |||||||||||||||| | ||||||||||||| |||||||||  | ||||||||| |    
T  29073278 taagtaacaacatcaggagaaattccctcagaaaccatttcagaatataaatcaaaagcttcattaacaagtttaactttgcacatgctatcaataatgg 29073179  T
Q  170 tgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtctcagca 223  Q
    |||||||||| ||||||| | || |||||||||| ||||| | |||||||||||    
T  29073178 tgttgtacattaccacattaggttgaaccaatttaccatcgactcgtctcagca 29073125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 29105851 - 29105698
Alignment:
Q  70 taagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcg 169  Q
    ||||| ||||||  |||| |||||| || || |||||||||| |||||||||||||||| | ||||||||||||| |||||||||  | ||||||||| |    
T  29105851 taagtaacaacatcaggagaaattccctcagaaaccatttcagaatataaatcaaaagcttcattaacaagtttaactttgcacatgctatcaataatgg 29105752  T
Q  170 tgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtctcagca 223  Q
    |||||||||| ||||||| | || |||||||||| ||||| | |||||||||||    
T  29105751 tgttgtacattaccacattaggttgaaccaatttaccatcgactcgtctcagca 29105698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 29886793 - 29886665
Alignment:
Q  89 aaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatc 188  Q
    |||||||||||| | |||||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||| ||||| || |||||||| ||||||||    
T  29886793 aaattctcttagaagccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacatc 29886694  T
Q  189 aagtcgaaccaatttcccatcaattcgtc 217  Q
    | |  |||||||||| ||||||| |||||    
T  29886693 aggctgaaccaattttccatcaactcgtc 29886665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 29897578 - 29897450
Alignment:
Q  89 aaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatc 188  Q
    |||||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||||  || |||||||| ||| |||     
T  29897578 aaattctctttgcaaccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcaataacggtattgtacattaccgcatt 29897479  T
Q  189 aagtcgaaccaatttcccatcaattcgtc 217  Q
    |||  |||||||||| ||||||| |||||    
T  29897478 aagctgaaccaatttaccatcaactcgtc 29897450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 24730356 - 24730217
Alignment:
Q  84 aggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcacc 183  Q
    |||| ||||||||||||||||||||| | |||||||||||||||||| ||||||||| ||| ||||||||| |  |||||||||| |||||||||| |||    
T  24730356 aggagaaattctcttagcaaccatttgagaatataaatcaaaagcatcattaacaagcttagctttgcacatattatcaataatcatgttgtacattacc 24730257  T
Q  184 acatcaagtcgaaccaatttcccatcaattcgtctcagca 223  Q
     ||| | |  |||| ||||||||||||| |||| ||||||    
T  24730256 gcattaggctgaactaatttcccatcaactcgtttcagca 24730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 29366931 - 29367058
Alignment:
Q  96 cttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatcaagtcga 195  Q
    ||||| |||||||||| |||||||||||||||| | ||||||||| ||| |||||||||  | ||||||||| ||||||||||| ||||||| | || ||    
T  29366931 cttagaaaccatttcagaatataaatcaaaagcttcattaacaagcttaactttgcacatgctatcaataatggtgttgtacattaccacattaggttga 29367030  T
Q  196 accaatttcccatcaattcgtctcagca 223  Q
    |||||||| ||||||| |||||||||||    
T  29367031 accaatttaccatcaactcgtctcagca 29367058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 29834711 - 29834577
Alignment:
Q  89 aaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatc 188  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||| ||||| || |||||||| ||||||      
T  29834711 aaattctcttagaaaccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacact 29834612  T
Q  189 aagtcgaaccaatttcccatcaattcgtctcagca 223  Q
    | |  |||||||||||||||| |  ||||||||||    
T  29834611 aggctgaaccaatttcccatctacacgtctcagca 29834577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 29866145 - 29866011
Alignment:
Q  89 aaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatc 188  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||| ||||| || |||||||| ||||||      
T  29866145 aaattctcttagaaaccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacact 29866046  T
Q  189 aagtcgaaccaatttcccatcaattcgtctcagca 223  Q
    | |  |||||||||||||||| |  ||||||||||    
T  29866045 aggctgaaccaatttcccatctacacgtctcagca 29866011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 29211562 - 29211715
Alignment:
Q  70 taagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcg 169  Q
    ||||| |||||| | ||| |||||| ||||| |||||||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||| ||||| |    
T  29211562 taagtaacaacattgggagaaattcccttagaaaccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcgataatgg 29211661  T
Q  170 tgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtctcagca 223  Q
    |  ||||||| ||||||| | |  |||||||||| ||||||| |||||| ||||    
T  29211662 tactgtacattaccacattaggctgaaccaatttaccatcaactcgtctgagca 29211715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 29946128 - 29945997
Alignment:
Q  89 aaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatc 188  Q
    |||||||||||| |||||||||| |||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||    | ||||| ||||||||    
T  29946128 aaattctcttagtaaccatttcagaatataaatcaacaacatcattaacaagtttatctttgcacataccatcaataatcacactatacattaccacatc 29946029  T
Q  189 aagtcgaaccaatttcccatcaattcgtctca 220  Q
    | || |||||||||| | |||||  |||||||    
T  29946028 aggttgaaccaattttctatcaacacgtctca 29945997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 216
Target Start/End: Complemental strand, 29084533 - 29084387
Alignment:
Q  70 taagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcg 169  Q
    ||||| |||||| | ||| |||||| ||||| |||||||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||| |||||  |    
T  29084533 taagtaacaacattgggagaaattcccttagaaaccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacataccataaataacgg 29084434  T
Q  170 tgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgt 216  Q
    | |||||||| ||| ||| |||  |||||||||| ||||||| ||||    
T  29084433 tattgtacattaccgcattaagctgaaccaatttaccatcaactcgt 29084387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 29894068 - 29893915
Alignment:
Q  70 taagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcg 169  Q
    ||||| |||||| | ||| |||||| ||||| |||||||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||| ||||| |    
T  29894068 taagtaacaacattgggagaaattcccttagaaaccatttcagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcgataatgg 29893969  T
Q  170 tgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtctcagca 223  Q
    |  ||||||| ||||||| | |  ||||||| || ||||||| |||||| ||||    
T  29893968 tactgtacattaccacattaggctgaaccaaattaccatcaactcgtctgagca 29893915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 25450430 - 25450282
Alignment:
Q  63 agtattataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatca 162  Q
    |||||| ||||||| |||| ||||| |||| |||||||||| |||||||||||||||||||||||||   ||||||||||||||||| ||||  | ||||    
T  25450430 agtattgtaagtgataacattaggagaaatcctcttagcaagcatttcataatataaatcaaaagcaacgttaacaagtttatctttacacattctatca 25450331  T
Q  163 ataatcgtgttgtacatcaccacatcaagtcgaaccaatttcccatcaa 211  Q
    |||| |  ||||||||| || |||| | |  |||||||||| |||||||    
T  25450330 ataagcacgttgtacattactacatgaggctgaaccaatttaccatcaa 25450282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 29905149 - 29905021
Alignment:
Q  89 aaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatc 188  Q
    |||||||||||| |||||||| | |||||||||||||||||| ||||||| |||||||||| |||| || |||||||||||   ||||| | ||||||||    
T  29905149 aaattctcttagaaaccattttagaatataaatcaaaagcatgattaacatgtttatctttacacatactatcaataatcgcaatgtactttaccacatc 29905050  T
Q  189 aagtcgaaccaatttcccatcaattcgtc 217  Q
    | || |||||| ||| ||||||| |||||    
T  29905049 aggttgaaccagttttccatcaactcgtc 29905021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 31000442 - 31000531
Alignment:
Q  90 aattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacat 179  Q
    |||||||||||||||||||||| ||||||||||||||||||  || |||||||||| |||||| | || ||||||||| ||| |||||||    
T  31000442 aattctcttagcaaccatttcagaatataaatcaaaagcatcgttgacaagtttatatttgcataaactatcaataattgtggtgtacat 31000531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 29098832 - 29098712
Alignment:
Q  96 cttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatcaagtcga 195  Q
    ||||| |||||||||| || ||||||||||||| | ||||||||||||| |||||||||  | ||||||||| ||||||||||| ||||||| | |  ||    
T  29098832 cttagaaaccatttcagaaaataaatcaaaagcttcattaacaagtttaactttgcacatgctatcaataatggtgttgtacattaccacattaggctga 29098733  T
Q  196 accaatttcccatcaattcgt 216  Q
    ||||| || ||||||| ||||    
T  29098732 accaaattaccatcaactcgt 29098712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 29115750 - 29115630
Alignment:
Q  96 cttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatcaagtcga 195  Q
    ||||| || ||||||| || ||||||||||||| | ||||||||||||| |||||||||  | ||||||||| ||||||||||| ||||||| | |  ||    
T  29115750 cttagaaatcatttcagaaaataaatcaaaagcttcattaacaagtttaactttgcacatgctatcaataatggtgttgtacattaccacattaggctga 29115651  T
Q  196 accaatttcccatcaattcgt 216  Q
    ||||| || ||||||| ||||    
T  29115650 accaaattaccatcaactcgt 29115630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 21161099 - 21161226
Alignment:
Q  60 taaagtattataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacacca 159  Q
    |||||||||||| || || ||| ||||| | |||||| | |||||||||||| |||||||||||||||||| | | ||||||||||| ||||| | || |    
T  21161099 taaagtattataggtaaccacattaggaaatattctcatggcaaccatttcagaatataaatcaaaagcatcaattacaagtttatccttgcataaacta 21161198  T
Q  160 tcaataatcgtgttgtacatcaccacat 187  Q
    | |||||| ||  ||||||| |||||||    
T  21161199 taaataattgtactgtacatgaccacat 21161226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 24934189 - 24934073
Alignment:
Q  63 agtattataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatca 162  Q
    |||| ||||||||||||||   ||| ||||||||||| ||| ||||||| || |||||||| | |||| | | ||||||||||| ||||||| || ||||    
T  24934189 agtagtataagtgacaacatctggaaaaattctcttaacaatcatttcagaacataaatcagaggcatgaattacaagtttatccttgcacaaactatca 24934090  T
Q  163 ataatcgtgttgtacat 179  Q
    ||||| || ||||||||    
T  24934089 ataattgtattgtacat 24934073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 24941722 - 24941606
Alignment:
Q  63 agtattataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatca 162  Q
    |||| ||||||||||||||   ||| ||||||||||| ||| ||||||| || |||||||| | |||| | | ||||||||||| ||||||| || ||||    
T  24941722 agtagtataagtgacaacatctggaaaaattctcttaacaatcatttcagaacataaatcagaggcatgaattacaagtttatccttgcacaaactatca 24941623  T
Q  163 ataatcgtgttgtacat 179  Q
    ||||| || ||||||||    
T  24941622 ataattgtattgtacat 24941606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 29876317 - 29876221
Alignment:
Q  93 tctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatca 189  Q
    |||||||||||||||||||  ||| |||||||| |||| || |||||| |||||||| |||| ||||| |||||||| | | ||||| |||||||||    
T  29876317 tctcttagcaaccatttcagtatacaaatcaaacgcatcatcaacaagcttatctttacacaaaccattaataatcgcggtatacattaccacatca 29876221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 24739669 - 24739796
Alignment:
Q  60 taaagtattataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacacca 159  Q
    ||||||||| |||||||  |||  |||| ||||||||||   || ||||| | |||||||||||||||||| | | ||||||||||| ||||| | || |    
T  24739669 taaagtattgtaagtgatgacatcaggagaaattctcttgagaagcatttgagaatataaatcaaaagcatcaattacaagtttatccttgcataaacta 24739768  T
Q  160 tcaataatcgtgttgtacatcaccacat 187  Q
    | |||||| ||  ||||||| |||||||    
T  24739769 taaataattgtactgtacatgaccacat 24739796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 24726324 - 24726258
Alignment:
Q  88 caaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcaca 154  Q
    ||||| |||||| ||||||||||||||||||||||||| |  | | | | |||||||||||||||||    
T  24726324 caaatgctcttatcaaccatttcataatataaatcaaatgtttcaattagaagtttatctttgcaca 24726258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 30578245 - 30578331
Alignment:
Q  63 agtattataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatcttt 149  Q
    ||||||||| |||||||||  |||| ||||||||||  ||||||| ||| ||||||||||| | |||| |   ||||||||||||||    
T  30578245 agtattatacgtgacaacatcaggaaaaattctcttgacaaccatctcacaatataaatcatacgcatcaactacaagtttatcttt 30578331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 10129662 - 10129486
Alignment:
Q  60 taaagtattataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacacca 159  Q
    |||| |||||||||||||||||  |||| ||||||||||||| | ||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  10129662 taaattattataagtgacaacatcaggaaaaattctcttagcgatcatttcagaatataaattaaaagcatcattaacaagtttatctttgcacatacca 10129563  T
Q  160 tcaataatcgtgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtctcagcatttctaaggcagc 236  Q
    ||||| ||| || | ||||| ||||||| | |  |||| | ||||||||||| ||||||||||| ||| | ||||||    
T  10129562 tcaatgatcatggtatacattaccacattaggctgaacaattttcccatcaactcgtctcagcaattccagggcagc 10129486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 4260799 - 4260920
Alignment:
Q  68 tataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataat 167  Q
    |||||||||||||| ||||| ||||||   ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |   |||||||     
T  4260799 tataagtgacaacattaggagaaattccgctagcaaccatttcataatataaatcaaaagcatcattaacaaatgtatctttgcacatattgtcaataac 4260898  T
Q  168 cgtgttgtacatcaccacatca 189  Q
    |||  ||||||| |||||||||    
T  4260899 cgtagtgtacattaccacatca 4260920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 4264421 - 4264542
Alignment:
Q  68 tataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataat 167  Q
    |||||||||||||| ||||| ||||||   ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |   |||||||     
T  4264421 tataagtgacaacattaggagaaattccgctagcaaccatttcataatataaatcaaaagcatcattaacaaatgtatctttgcacatattgtcaataac 4264520  T
Q  168 cgtgttgtacatcaccacatca 189  Q
    |||  ||||||| |||||||||    
T  4264521 cgtagtgtacattaccacatca 4264542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 17250828 - 17250710
Alignment:
Q  70 taagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcg 169  Q
    ||||| |||||| ||||| |||  |||||  ||| ||||||| ||||||||||||| ||||   | |||||||||||||| || | |||||||||||| |    
T  17250828 taagtaacaacattaggaaaaaccctcttctcaaacatttcacaatataaatcaaacgcatccctcacaagtttatctttacataaaccatcaataatag 17250729  T
Q  170 tgttgtacatcaccacatc 188  Q
    | || ||||| || |||||    
T  17250728 tattatacattacaacatc 17250710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 19489730 - 19489686
Alignment:
Q  105 catttcataatataaatcaaaagcataattaacaagtttatcttt 149  Q
    ||||||| |||||||||||||||||| ||| ||| ||||||||||    
T  19489730 catttcagaatataaatcaaaagcatcatttacatgtttatcttt 19489686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 15063358 - 15063510
Alignment:
Q  68 tataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataat 167  Q
    |||||||||| |||  |||| ||||||| |||| |||||||||| ||||||||||||||||||  |||||||||||||| || |||| || |||||||||    
T  15063358 tataagtgactacatcaggagaaattcttttagaaaccatttcacaatataaatcaaaagcatcgttaacaagtttatccttacacatactatcaataat 15063457  T
Q  168 cgtgttgtacatcaccacatcaagtcgaaccaatttcccatcaattcgtctca 220  Q
    |||| | ||||| ||||||| | | ||||||||||| |||||||  |||||||    
T  15063458 cgtgctatacattaccacattaggccgaaccaattttccatcaacccgtctca 15063510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 54204 - 54338
Alignment:
Q  89 aaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatc 188  Q
    |||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||||||||  ||| |||||||||||  || |||||||| ||| |||     
T  54204 aaattctctttgcaaccatttcagaatataaatcaaaagcatcattaacatgtttatctttatacataccatcaataacggtattgtacattaccgcatt 54303  T
Q  189 aagtcgaaccaatttcccatcaattcgtctcagca 223  Q
    |||  |||||||||| |||||||  ||||||||||    
T  54304 aagctgaaccaattttccatcaacacgtctcagca 54338  T

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Target: scaffold0237 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 21839 - 21711
Alignment:
Q  89 aaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgtgttgtacatcaccacatc 188  Q
    |||||||||||| |||| ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||| ||||| || |||||||| ||||||||    
T  21839 aaattctcttagaaaccttttcagaatataaatcaaaagcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacatc 21740  T
Q  189 aagtcgaaccaatttcccatcaattcgtc 217  Q
    | |  |||| ||||| |||||| ||||||    
T  21739 aggctgaactaattttccatcatttcgtc 21711  T

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Target: scaffold1840 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1840
Description:

Target: scaffold1840; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 922 - 830
Alignment:
Q  72 agtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaat 164  Q
    |||||||||||||||| |||||||||| | || ||||||| ||||||| ||| | |||| ||| ||||||||||||||||||| |||||||||    
T  922 agtgacaacagtaggagaaattctctttgtaatcatttcagaatataactcatatgcatcatttacaagtttatctttgcacaaaccatcaat 830  T

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Target: scaffold0572 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 2744 - 2652
Alignment:
Q  72 agtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaat 164  Q
    |||||||||||||||| |||||||||| | || ||||||| ||||||| ||| | |||| ||| ||||||||||||||||||| |||||||||    
T  2744 agtgacaacagtaggagaaattctctttgtaatcatttcagaatataactcatatgcatcatttacaagtttatctttgcacaaaccatcaat 2652  T

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Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 188
Target Start/End: Complemental strand, 136888 - 136771
Alignment:
Q  71 aagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgt 170  Q
    |||||||||||  |||| ||||| |||| |||| ||||||| ||||||| ||| |||||| | | |||||||||||||| |||| || |||||||||  |    
T  136888 aagtgacaacatcaggagaaattgtctttgcaatcatttcagaatataactcataagcatcaattacaagtttatctttacacaaactatcaataattat 136789  T
Q  171 gttgtacatcaccacatc 188  Q
    | | ||||| ||||||||    
T  136788 gctatacattaccacatc 136771  T

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Target: scaffold0014; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 105223 - 105339
Alignment:
Q  71 aagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatcaataatcgt 170  Q
    ||||||||||||||||| ||||| |||| | || ||||||| | ||||| ||| | |||| | | ||||||||||||||||||| || |||||| |  ||    
T  105223 aagtgacaacagtaggagaaattttctttgtaatcatttcagagtataactcatatgcatcacttacaagtttatctttgcacaaactatcaatgactgt 105322  T
Q  171 gttgtacatcaccacat 187  Q
    ||| ||||| |||||||    
T  105323 gttatacattaccacat 105339  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 200
Target Start/End: Original strand, 44263070 - 44263207
Alignment:
Q  63 agtattataagtgacaacagtaggacaaattctcttagcaaccatttcataatataaatcaaaagcataattaacaagtttatctttgcacacaccatca 162  Q
    |||| ||||||||||||||   ||| ||||||||||  ||| ||||||| || ||||| || | |||| | | | |||||||| |||||||| || || |    
T  44263070 agtagtataagtgacaacatccggaaaaattctcttgacaatcatttcagaacataaagcagaggcatcaattataagtttatttttgcacaaactatga 44263169  T
Q  163 ataatcgtgttgtacatcaccacatcaagtcgaaccaa 200  Q
    ||||| || |||||||| ||||||| | | ||||||||    
T  44263170 ataattgtattgtacatgaccacattaggccgaaccaa 44263207  T

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