View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0965_low_29 (Length: 278)

Name: NF0965_low_29
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0965_low_29
NF0965_low_29
[»] chr1 (1 HSPs)
chr1 (1-190)||(1717095-1717284)
[»] chr3 (17 HSPs)
chr3 (1-187)||(19848868-19849057)
chr3 (1-187)||(20036654-20036843)
chr3 (1-187)||(19989403-19989589)
chr3 (1-187)||(19951005-19951191)
chr3 (1-187)||(26646891-26647071)
chr3 (106-187)||(19956070-19956151)
chr3 (120-187)||(19943720-19943787)
chr3 (130-187)||(19812290-19812347)
chr3 (111-187)||(19858063-19858139)
chr3 (140-187)||(19853532-19853579)
chr3 (120-187)||(20016252-20016319)
chr3 (106-187)||(19838379-19838460)
chr3 (120-187)||(24840025-24840092)
chr3 (136-187)||(30914659-30914710)
chr3 (119-184)||(19818556-19818621)
chr3 (115-187)||(20046118-20046190)
chr3 (67-187)||(26653099-26653219)
[»] chr8 (4 HSPs)
chr8 (106-187)||(22652139-22652220)
chr8 (120-187)||(22689706-22689773)
chr8 (140-187)||(22685731-22685778)
chr8 (2-58)||(22685843-22685899)
[»] chr4 (2 HSPs)
chr4 (115-187)||(6397789-6397861)
chr4 (117-186)||(6398258-6398327)
[»] chr5 (2 HSPs)
chr5 (98-169)||(26354996-26355067)
chr5 (119-187)||(9815036-9815104)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 1717095 - 1717284
Alignment:
Q  1 ttggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttataggaaacaaggagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1717095 ttggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagataaattgatccttgcaagagaacaactttataggaaacaaggagg 1717194  T
Q  101 taggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggt 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717195 taggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggt 1717284  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 19848868 - 19849057
Alignment:
Q  1 ttggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttatag---gaaacaagg 97  Q
    |||||||||||||||||  ||| ||| | |||||||||||||||||||||||||||||  | ||| |||||||| ||||||||  ||    |||||| ||    
T  19848868 ttggtgatcctgttttcacttcacttcatgaccaagaaatgaaagagattgaagaaaagctcatcattgcaagacaacaacttactaatgcgaaacatgg 19848967  T
Q  98 aggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    ||||  | |||| ||| |||  ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19848968 aggtgtggctagcacatcatactggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 19849057  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 20036843 - 20036654
Alignment:
Q  1 ttggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttatag---gaaacaagg 97  Q
    |||||||||||||||||  ||| ||| | |||||||||||||||||||||||||||||  | ||| |||||||| ||||||||  ||    |||||| ||    
T  20036843 ttggtgatcctgttttcacttcacttcatgaccaagaaatgaaagagattgaagaaaagctcatcattgcaagacaacaacttactaatgcgaaacatgg 20036744  T
Q  98 aggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    ||||  | |||| ||| |||  ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20036743 aggtgtggctagcacatcatactggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 20036654  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 19989403 - 19989589
Alignment:
Q  1 ttggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttataggaaacaaggagg 100  Q
    ||||||||||||||||| || | ||| |||||||||||||||||||| | ||| |  |||||||||||| |||| | |||||||||| ||   |   ||     
T  19989403 ttggtgatcctgttttcattacacttcaagaccaagaaatgaaagaggtggaaaaggaattgatccttgaaagacagcaactttataagactaagtcagc 19989502  T
Q  101 taggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    ||   |||||||||   ||||||||||||||||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  19989503 taatgctagaacaagggtatggatggatgttttcattgataaaggtaatgaacttgaacatgaagcatttcttgctacttggttgtc 19989589  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 19951005 - 19951191
Alignment:
Q  1 ttggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttataggaaacaaggagg 100  Q
    ||||||||||||||||| || | ||| |||| ||||||||||||||| ||||||||||  | ||| |||||||| |   ||||| || ||   ||  |||    
T  19951005 ttggtgatcctgttttcattacacttcaagatcaagaaatgaaagaggttgaagaaaagctcatcattgcaagacagacactttctaagactaaaacagg 19951104  T
Q  101 taggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    || | ||||| ||||||||||||||||| ||||   |||||||||||||||||||||||||||||| || |||| ||||||||||||    
T  19951105 tatggctagagcaacattatggatggatattttcactgataaaggtagtgaaattgaacatgaagccttccttgttacttggttgtc 19951191  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 26646891 - 26647071
Alignment:
Q  1 ttggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttataggaaacaaggagg 100  Q
    |||| |||||||||||| |||| ||||||||||||||||||| |||| | ||| | ||| | |||||||||||||| ||||||| ||   |||| ||       
T  26646891 ttggggatcctgttttcatttcacttgaagaccaagaaatgagagaggtggaaaagaaactcatccttgcaagagagcaactttgta---aacacgg--- 26646984  T
Q  101 taggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    || | |||||||| |||||||||| |||  |||  | |||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  26646985 taaggctagaacaccattatggatcgatagtttcatggataaaggtagtgaaattgaacatgaagcattcctttctacttggttgtc 26647071  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 19956070 - 19956151
Alignment:
Q  106 ctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    |||||||| || ||||||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19956070 ctagaacatcactatggatggatattttcattgataaaggtagtgaaattgaacatgaagcttttcttgctacttggttgtc 19956151  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 19943720 - 19943787
Alignment:
Q  120 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    ||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19943720 tggatggatattttcatcgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 19943787  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 19812290 - 19812347
Alignment:
Q  130 tttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19812290 ttttcgttggtaaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 19812347  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 19858063 - 19858139
Alignment:
Q  111 acaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    |||||| | ||||||||| ||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19858063 acaacagtgtggatggatattttcatcgataaaggtagtgaaattgagcatgaagcatttcttgctacttggttgtc 19858139  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 19853532 - 19853579
Alignment:
Q  140 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19853532 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 19853579  T

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Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 20016319 - 20016252
Alignment:
Q  120 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    ||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20016319 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtc 20016252  T

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Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 19838379 - 19838460
Alignment:
Q  106 ctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    |||||||| || ||||||||||| ||||  | ||||||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  19838379 ctagaacatcactatggatggatattttcatcgataaaggtagcgaaattgaacatgaagcttttctagctacttggttgtc 19838460  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 24840092 - 24840025
Alignment:
Q  120 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    ||||||||| ||||  | ||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  24840092 tggatggatattttcatcgataaaggtagtgaagttgagcatgaagcatttcttgctacttggttgtc 24840025  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 30914659 - 30914710
Alignment:
Q  136 ttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  30914659 ttgataaagttagtgaaattgaacatgaagcattccttactacttggttgtc 30914710  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 19818556 - 19818621
Alignment:
Q  119 atggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggtt 184  Q
    |||||||||  ||||| ||| ||||||||  ||||||||||||||||| |||||||||||||||||    
T  19818556 atggatggaaatttttattggtaaaggtaccgaaattgaacatgaagcttttcttgctacttggtt 19818621  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 20046118 - 20046190
Alignment:
Q  115 cattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    |||||||||||||| | ||  | ||||||||||||||||||||||| ||||| || ||| |||||||||||||    
T  20046118 cattatggatggatatgttcatcgataaaggtagtgaaattgaacacgaagccttccttactacttggttgtc 20046190  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 187
Target Start/End: Original strand, 26653099 - 26653219
Alignment:
Q  67 ttgcaagagaacaactttataggaaacaaggaggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagc 166  Q
    |||||||| |||||||| |||| ||||| ||||||  | |||  ||| ||  ||| |||||| ||||  ||||  |||||||||||||||||||||| ||    
T  26653099 ttgcaagaaaacaacttaatagcaaacacggaggtgtggctaacacaccaacatgaatggatattttcattgactaaggtagtgaaattgaacatgatgc 26653198  T
Q  167 atttcttgctacttggttgtc 187  Q
    ||| |||||  ||||||||||    
T  26653199 attccttgcagcttggttgtc 26653219  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 22652220 - 22652139
Alignment:
Q  106 ctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    ||||| ||||||||||||||||| ||||  | ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  22652220 ctagagcaacattatggatggatattttcatcgataaaggtagtgaaattgaacatgaagcgttccttgctacttggttgtc 22652139  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 22689773 - 22689706
Alignment:
Q  120 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    ||||||||||||||  | ||||| |||| |||| ||||||||||||||||||||||||||||||||||    
T  22689773 tggatggatgttttcatcgataatggtaatgaatttgaacatgaagcatttcttgctacttggttgtc 22689706  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 22685778 - 22685731
Alignment:
Q  140 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||    
T  22685778 taaaggtagtgaaattgagcatgaagcatttcttgctgcttggttgtc 22685731  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 22685899 - 22685843
Alignment:
Q  2 tggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaa 58  Q
    ||||||||||||||||  ||| ||| |||||||||||||||||||||||||| ||||    
T  22685899 tggtgatcctgttttcacttcacttcaagaccaagaaatgaaagagattgaacaaaa 22685843  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 6397861 - 6397789
Alignment:
Q  115 cattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    |||||||||||||| | ||  | ||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  6397861 cattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagccttccttgctacctggttgtc 6397789  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 6398258 - 6398327
Alignment:
Q  117 ttatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgt 186  Q
    |||||||||||| | ||| |  |||||||||||||||||||||||||||| || ||||||| ||||||||    
T  6398258 ttatggatggatatgtttatctataaaggtagtgaaattgaacatgaagccttccttgctaattggttgt 6398327  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 26355067 - 26354996
Alignment:
Q  98 aggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatt 169  Q
    ||||| ||| |||| | |||||||||||||||||||  | ||||||||||||||| ||||||||||||||||    
T  26355067 aggtaagccaagaatatcattatggatggatgttttcatggataaaggtagtgaagttgaacatgaagcatt 26354996  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 9815036 - 9815104
Alignment:
Q  119 atggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 187  Q
    |||||||||| ||||  | || ||||||||||||||||| |||||||| ||  ||||||| ||||||||    
T  9815036 atggatggattttttcatcgacaaaggtagtgaaattgagcatgaagcgttcattgctacgtggttgtc 9815104  T

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