View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0965_low_31 (Length: 254)

Name: NF0965_low_31
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0965_low_31
NF0965_low_31
[»] chr5 (1 HSPs)
chr5 (18-175)||(6729372-6729529)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 6729372 - 6729529
Alignment:
Q  18 agtgagatgaagtgataacagtgtagagaaaggaataaaatttgttgaggtagagaatggggttgttgcagatccagtgaaaggtgatgagtttgtgtgg 117  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  6729372 agtgtgatgaagtgataacggtgtagagaaaagaataaaatttgttgaggtagagaatggggttgttgcagatctagtgaagggtgatgagtttgtgtgg 6729471  T
Q  118 gttagaggtagtgtggtgttggatataggagtaaggactggttcaagcacaggttctg 175  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6729472 gttagaggtagtgtggtgttggatataggagtaaggattggttcaagcacaggttctg 6729529  T

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