View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0965_low_32 (Length: 251)

Name: NF0965_low_32
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0965_low_32
NF0965_low_32
[»] chr2 (3 HSPs)
chr2 (3-251)||(8019973-8020221)
chr2 (172-249)||(22391343-22391420)
chr2 (17-75)||(22391574-22391632)
[»] chr3 (30 HSPs)
chr3 (153-251)||(27975564-27975662)
chr3 (153-251)||(28132162-28132260)
chr3 (153-251)||(28510616-28510714)
chr3 (153-251)||(28053687-28053785)
chr3 (153-251)||(28064112-28064210)
chr3 (153-251)||(28147946-28148044)
chr3 (153-251)||(28183979-28184077)
chr3 (156-251)||(28002390-28002485)
chr3 (153-251)||(28481444-28481542)
chr3 (153-251)||(28081955-28082053)
chr3 (153-251)||(28159415-28159513)
chr3 (153-231)||(28035660-28035738)
chr3 (153-240)||(27460990-27461077)
chr3 (153-251)||(27918584-27918682)
chr3 (15-77)||(28159634-28159696)
chr3 (14-84)||(28148170-28148242)
chr3 (15-76)||(28184199-28184260)
chr3 (24-151)||(28035806-28035932)
chr3 (153-251)||(11418943-11419041)
chr3 (206-251)||(17746167-17746212)
chr3 (206-251)||(19047487-19047532)
chr3 (19-79)||(28481226-28481286)
chr3 (19-79)||(28510407-28510467)
chr3 (15-82)||(28053934-28054000)
chr3 (15-82)||(28064359-28064425)
chr3 (19-75)||(28082191-28082247)
chr3 (24-154)||(28002553-28002682)
chr3 (213-251)||(12146236-12146274)
chr3 (206-251)||(27392230-27392275)
chr3 (14-78)||(27460800-27460864)
[»] scaffold0257 (3 HSPs)
scaffold0257 (153-251)||(17541-17639)
scaffold0257 (118-154)||(17704-17740)
scaffold0257 (51-83)||(17766-17798)
[»] chr7 (2 HSPs)
chr7 (14-79)||(8693152-8693216)
chr7 (153-251)||(8693277-8693375)
[»] scaffold0043 (1 HSPs)
scaffold0043 (172-251)||(54687-54766)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 8020221 - 8019973
Alignment:
Q  3 gatgtccaagaatatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaacc 102  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020221 gatgtgcaataatatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaacc 8020122  T
Q  103 attaatatcaaatatgaagtctgctgttgatgctgaagccagggatagttttggtagattttcaaatattacaactttcagatttggaatctccactttg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020121 attaatatcaaatatgaagtctgctgttgatgctgaagccagggatagttttggtagattttcaaatattacaactttcagatttggaatctccactttg 8020022  T
Q  203 tgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020021 tgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 8019973  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 22391420 - 22391343
Alignment:
Q  172 tacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttc 249  Q
    ||||||||| |||||||| || |  ||||| |||||| |  |||||| |||||||||||||||||||| |||||||||    
T  22391420 tacaacttttagatttggcatattgactttctgatcaccttcttcacatacaaatatttcctctagcttatatgcttc 22391343  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 22391632 - 22391574
Alignment:
Q  17 tgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtacc 75  Q
    |||||||| ||||||||||| |||||||| ||| |||||||||| | | ||||||||||    
T  22391632 tgtaattaattacagccaacatgtaatagatttcaaaaatattggacaaagtgtgtacc 22391574  T

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Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 27975662 - 27975564
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  27975662 ttggtagattttcaaatattacaactatcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcagctgcttctc 27975564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 28132260 - 28132162
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||    
T  28132260 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcgtctgcttctc 28132162  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 28510616 - 28510714
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  28510616 ttggtagattttcaaatattacaagttttagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcatctgcttctc 28510714  T

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Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 28053785 - 28053687
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  28053785 ttggtagattttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctc 28053687  T

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Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 28064210 - 28064112
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  28064210 ttggtagattttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctc 28064112  T

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Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 28148044 - 28147946
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| ||||||||    
T  28148044 ttggtagattttcaaatattacaagttttagatttggaatctccactttgtgatcatcaaattcacttacaaatatttcctctaactcatctgcttctc 28147946  T

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Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 28184077 - 28183979
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||||||||||||||| ||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  28184077 ttggtagattttcaaatactacacattctagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctccagctcatctgcttctc 28183979  T

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Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 28002485 - 28002390
Alignment:
Q  156 gtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    ||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||    
T  28002485 gtagattttcaaatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctacctcgtctgcttctc 28002390  T

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Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 28481444 - 28481542
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| | ||| | ||||||||    
T  28481444 ttggtagattttcaaatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctcgaactcgtctgcttctc 28481542  T

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Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 28082053 - 28081955
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||| ||||||||||||| ||||| |   |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||    
T  28082053 ttggaagattttcaaatactacaaatcgtagatatggaatctccactttgtgatcatcaccttcgcttacaaatatttcctctaactcatctgcttctc 28081955  T

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Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 28159513 - 28159415
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||||||||||||||| ||||  ||  ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| || |||||    
T  28159513 ttggtagattttcaaatactacacattctagatttggaatcttcactttctgatcatcaccttcaattacaaatatttcctctagctcatctgattctc 28159415  T

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Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 28035738 - 28035660
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttc 231  Q
    |||||||||||||||| | ||||| ||| |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  28035738 ttggtagattttcaaacactacaaattttagatttggaatctccactttctgatcatcaccttcacttgcaaatatttc 28035660  T

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Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 27460990 - 27461077
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctc 240  Q
    ||||||||||| |||||| ||||| ||| |||||||||||||||| ||| ||||||||   |||||||||||||||||||||||||||    
T  27460990 ttggtagatttacaaatactacaagttttagatttggaatctccagtttctgatcatctttttcacttacaaatatttcctctagctc 27461077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 27918682 - 27918584
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||||||||||||||| || |  ||  |||||||||||||||||||| ||||||||||||||| || |||||||||| || ||||||| ||||||||    
T  27918682 ttggtagattttcaaatactagatattctagatttggaatctccactttctgatcatcaccttcatttgcaaatatttcatccagctcatctgcttctc 27918584  T

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Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 28159696 - 28159634
Alignment:
Q  15 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgt 77  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||    
T  28159696 tatgtaataatttacagcaaacatgtaatagtttttaaaaatattggatagagtgtgtaccgt 28159634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 28148242 - 28148170
Alignment:
Q  14 atatgtaattatttacagccaacgtgtaatagtttttaaaa--atattgtatagagtgtgtaccgtagccaaa 84  Q
    |||||||||||||||| |||||| |||||||||||||||||  |||||| ||||||| |||||||||||||||    
T  28148242 atatgtaattatttacggccaacatgtaatagtttttaaaaatatattggatagagtctgtaccgtagccaaa 28148170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 28184260 - 28184199
Alignment:
Q  15 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccg 76  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  28184260 tatgtaataatttacagcaaacatgtaatagtttttaaaaatattggatagagtgtgtaccg 28184199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 28035932 - 28035806
Alignment:
Q  24 atttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaaccattaatatcaaatatgaagtc 123  Q
    ||||||||||||| | |||||||||| |||||||||| |||||||| ||||||||| |||||| || || ||||||||||  |||||||  |   ||||     
T  28035932 atttacagccaacatttaatagtttt-aaaaatattggatagagtgcgtaccgtagtcaaactcgccagaatataaaccagaaatatcattttcaaagtt 28035834  T
Q  124 tgctgttgatgctgaagccagggatagt 151  Q
    || |||||||| ||||||||| ||||||    
T  28035833 tgttgttgatgatgaagccagagatagt 28035806  T

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Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 11419041 - 11418943
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||| ||||||||||||| || || ||| ||||| ||||||||   ||| |||| |||| |||||||||||||||||||||||||||||| ||| ||||    
T  11419041 ttggcagattttcaaatactaaaaatttaagattcggaatctcgcttttctgatgatcatcttcacttacaaatatttcctctagctcatctgcgtctc 11418943  T

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Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 17746167 - 17746212
Alignment:
Q  206 tcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  17746167 tcatcaccttcacttccaaatatttcctctagctcatatgcttctc 17746212  T

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Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 19047487 - 19047532
Alignment:
Q  206 tcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  19047487 tcatcaccttcacttccaaatatttcctctagctcatatgcttctc 19047532  T

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Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 28481226 - 28481286
Alignment:
Q  19 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 79  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||    
T  28481226 taataatttacagccaacatgtaatagttttaaaaaatattggatagaatgtgtaccgtag 28481286  T

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Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 28510407 - 28510467
Alignment:
Q  19 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 79  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||    
T  28510407 taataatttacagccaacatgtaatagttttaaaaaatattggatagaatgtgtaccgtag 28510467  T

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Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 28054000 - 28053934
Alignment:
Q  15 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagcca 82  Q
    |||||||| ||||||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||    
T  28054000 tatgtaataatttacagccaacat-taatagtttttaagaatattggatagagtgtgtaccatagcca 28053934  T

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Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 28064425 - 28064359
Alignment:
Q  15 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagcca 82  Q
    |||||||| ||||||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||    
T  28064425 tatgtaataatttacagccaacat-taatagtttttaagaatattggatagagtgtgtaccatagcca 28064359  T

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Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 28082247 - 28082191
Alignment:
Q  19 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtacc 75  Q
    |||| |||||||| |||| ||||||||||||||||||||||| ||||| ||||||||    
T  28082247 taataatttacagtcaacatgtaatagtttttaaaaatattggatagaatgtgtacc 28082191  T

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Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 28002682 - 28002553
Alignment:
Q  24 atttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaaccattaatatcaaatatgaagtc 123  Q
    ||||||||||||| | |||||||||| |||||||||| |||||||||||||| | | |||||  |   | |  |||||||  |||||||  |  ||||||    
T  28002682 atttacagccaacatttaatagtttt-aaaaatattggatagagtgtgtaccctcgtcaaaccagaccgaacgtaaaccagaaatatcattttcgaagtc 28002584  T
Q  124 tgctgttgatgctgaagccagggatagtttt 154  Q
    ||||||||||||||||| ||| |||||||||    
T  28002583 tgctgttgatgctgaagtcagagatagtttt 28002553  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 12146274 - 12146236
Alignment:
Q  213 cttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  12146274 cttcacatacaaatatttcctctagctcatttgcttctc 12146236  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 27392230 - 27392275
Alignment:
Q  206 tcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||| |||| | ||||||||||||||||||||||| ||||||||    
T  27392230 tcatcaacttcgcatacaaatatttcctctagctcatctgcttctc 27392275  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 27460800 - 27460864
Alignment:
Q  14 atatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgta 78  Q
    ||||| || |||||||||||||| ||||||  |||| | ||| |||| |||||||||||||||||    
T  27460800 atatgcaaatatttacagccaacatgtaatgattttcagaaagattggatagagtgtgtaccgta 27460864  T

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Target: scaffold0257 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 17639 - 17541
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||||||    
T  17639 ttggtagattttcaaatactacaaattttagatttggaatctccattttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctc 17541  T

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Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 17740 - 17704
Alignment:
Q  118 gaagtctgctgttgatgctgaagccagggatagtttt 154  Q
    |||||||| |||||||||||||||||| |||||||||    
T  17740 gaagtctggtgttgatgctgaagccagagatagtttt 17704  T

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Target: scaffold0257; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 17798 - 17766
Alignment:
Q  51 aaaaatattgtatagagtgtgtaccgtagccaa 83  Q
    |||||||||| ||||||||||||||||||||||    
T  17798 aaaaatattggatagagtgtgtaccgtagccaa 17766  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 8693152 - 8693216
Alignment:
Q  14 atatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 79  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||    
T  8693152 atatgtaattatttacagccaacgtgtaatag-tttaaaaaatattggatagagtgtgtaccgtag 8693216  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 8693277 - 8693375
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    |||| ||||||||||||| ||||  ||  |||||||||||||| ||||| | ||||  |||||||||| |||||||||| || ||||||| ||||||||    
T  8693277 ttggaagattttcaaatactacatattctagatttggaatctcgactttctcatcacgaccttcacttgcaaatatttcatccagctcatctgcttctc 8693375  T

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Target: scaffold0043 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 54687 - 54766
Alignment:
Q  172 tacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctc 251  Q
    ||||||||||||||||||||  |  ||||| |||||| |  |||||| ||||||||||||||||||||||| ||||||||    
T  54687 tacaactttcagatttggaagattgactttctgatcaccttcttcacatacaaatatttcctctagctcatgtgcttctc 54766  T

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