View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0965_low_33 (Length: 242)
Name: NF0965_low_33
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 3895341 - 3895519
Alignment:
| Q |
1 |
acatggctgataagacaaaagaaggagctgagaaaacggcagagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895341 |
acatggctgataagacaaaagaaggagctgagaaaacggcggagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaat |
3895440 |
T |
|
| Q |
101 |
ggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895441 |
ggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
3895519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University