View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0965_low_37 (Length: 230)
Name: NF0965_low_37
Description: NF0965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0965_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3895365 - 3895139
Alignment:
| Q |
1 |
ccttcttttgtcttatcagccatgtaactcgctccttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgcag |
100 |
Q |
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| T |
3895365 |
ccttcttttgtcttatcagccatgtaactcgctccttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgcag |
3895266 |
T |
|
| Q |
101 |
cttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttgttctctcctttgcatcataagcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895265 |
cttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttgttctctcctttgcatcataagcata |
3895166 |
T |
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| Q |
201 |
atctctagctttctccccagcactctc |
227 |
Q |
| |
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||||||||| ||||| |||||| |||| |
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| T |
3895165 |
atctctagccttctctccagcattctc |
3895139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 3895329 - 3895268
Alignment:
| Q |
169 |
tcctttgttctctcctttgcatcataagcataatctctagctttctccccagcactctctgc |
230 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895329 |
tccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
3895268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 3895079 - 3895016
Alignment:
| Q |
35 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
98 |
Q |
| |
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|||| |||||||| || ||| | ||||||||||| |||||||||||||| |||||| ||||||| |
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| T |
3895079 |
cttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgc |
3895016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 3895056 - 3895016
Alignment:
| Q |
190 |
tcataagcataatctctagctttctccccagcactctctgc |
230 |
Q |
| |
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||||||||||| |||||||||||||| |||||| ||||||| |
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| T |
3895056 |
tcataagcatagtctctagctttctctccagcattctctgc |
3895016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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