View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0966_low_1 (Length: 525)
Name: NF0966_low_1
Description: NF0966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0966_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 158 - 513
Target Start/End: Complemental strand, 48857036 - 48856688
Alignment:
| Q |
158 |
acctccaagtatcatattaactgagaagattaaatcctcaatatttgacgacttcagtccttgcaattaagacgtgagcaagacatgtttagaatggtag |
257 |
Q |
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| T |
48857036 |
acctccaagtatcatattaactgagaagattaaatcctcaatatttgacgacttcagtccttgcaattaagacgtgagcaaaacatgtttagaatggtag |
48856937 |
T |
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| Q |
258 |
cataaatacttaacaagtcaaatgcagacactcacttcctatttagaacaagatccgccaatagtgatctcagaaatcaaaatgtaagaggggtcagggg |
357 |
Q |
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| T |
48856936 |
cataaatacttaacaagtcaaatgcagacactcacttcctatttagaacaagatcagccaatagtgatctcagaaatcaaaatgtaagagg-------gg |
48856844 |
T |
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| Q |
358 |
tcgttggaatatcaaattgacaggaagtcaatgtgtattctctgtgctacagtcaaataccagagaaacttataaaaaagaacaaattattaaaccttat |
457 |
Q |
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| T |
48856843 |
tcgttggaatatcaaattgacaggaagtcaatgtttattctctgtgctacagtcaaataccagagaaacttataaaaaagaacaaattattaaaccttat |
48856744 |
T |
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| Q |
458 |
cagcatagctgatcccataatcatccacagcttcacattccattcactgcaacagc |
513 |
Q |
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| T |
48856743 |
cagcatagctgatcccataatcatccacagcttcacattccattcactgcagcagc |
48856688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 48866291 - 48866154
Alignment:
| Q |
19 |
ttcattatctgtgctacagtcatatagtcatataccagagaaacttacaagaaagaacaaaagcacaggacttgacaaattgtttagccttacattccat |
118 |
Q |
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| T |
48866291 |
ttcattatctgtgctacagtcatatagtcatataccagagaaacttacaagaaagaacaaaagcacaggacttgacaaattgttgagccttacattccat |
48866192 |
T |
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| Q |
119 |
ccacagcagcagccaacatggattggcatctaattcaa |
156 |
Q |
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| T |
48866191 |
ccacagcagcagccaacatggattggcatctacttcaa |
48866154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 48866327 - 48866270
Alignment:
| Q |
355 |
gggtcgttggaatatcaaattgacaggaagtcaatgtgtattctctgtgctacagtca |
412 |
Q |
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| T |
48866327 |
gggtggttggaatatcaaattgacaggaaaacaatgttcattatctgtgctacagtca |
48866270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 501
Target Start/End: Complemental strand, 48873315 - 48873255
Alignment:
| Q |
443 |
attattaaaccttatcagcatagctgatcccata--atcatccacagcttcacattccatt |
501 |
Q |
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| T |
48873315 |
attatttaaccttaccagcatagctggtcacaaacaatcatccacagcttcacattccatt |
48873255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 501
Target Start/End: Complemental strand, 48878619 - 48878559
Alignment:
| Q |
443 |
attattaaaccttatcagcatagctgatcccata--atcatccacagcttcacattccatt |
501 |
Q |
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| T |
48878619 |
attatttaaccttaccagcatagctggtcacaaacaatcatccacagcttcacattccatt |
48878559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 496
Target Start/End: Complemental strand, 48900495 - 48900436
Alignment:
| Q |
439 |
acaaattattaaaccttatcagcatagctgatccca--taatcatccacagcttcacatt |
496 |
Q |
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| T |
48900495 |
acaaattattaagctttatcaacatatctgatcacagataatcatccacagcttcacatt |
48900436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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