View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0966_low_2 (Length: 402)
Name: NF0966_low_2
Description: NF0966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0966_low_2 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 101 - 393
Target Start/End: Original strand, 10530744 - 10531016
Alignment:
| Q |
101 |
gaattgttttcagtctcctcttaattgtgggttaatatcataatttaataagaggtgaatgttgagagaaaataggagatagtggttcgtatgattagga |
200 |
Q |
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| T |
10530744 |
gaattgttttccgtctcttcctaattgtgggttaacatcc------agtaagaggtgaatattgagagaaaatagaagatagtggttcgtatgactagga |
10530837 |
T |
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| Q |
201 |
aagggagaaaggtagttctaatcatgtagaccaattcatggcactaacttcctacattttagcttattcttttccactattatttttgcttgtgtcacta |
300 |
Q |
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| T |
10530838 |
aagggagaaaggtagttctaatcat--------------ggcactaacttcctacattttagcttattctttcccactattatttttgcttgtgtcacta |
10530923 |
T |
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| Q |
301 |
cttctccatatatataaatccgcttgataaataaatattaaaacaagtttatttactaattatttggctactaatttaaactagcatattatt |
393 |
Q |
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| T |
10530924 |
cttctccatatatataaatccgcttgataaataaatattaaaataagtttatttactaattatttggctactaatttaaactagcatattatt |
10531016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 149 - 351
Target Start/End: Original strand, 46405261 - 46405463
Alignment:
| Q |
149 |
taagaggtgaatgttgagagaaaataggagatagtggttcgtatgattaggaaagggagaaaggtagttctaatcatgtagaccaattcatggcactaac |
248 |
Q |
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| T |
46405261 |
taagaggtgaatgttgagagaaaataggggatagtggttcgtatgactaggaaagggaggaaagtagttctaatcatgtagaccaattcatggcactaac |
46405360 |
T |
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| Q |
249 |
ttcctacattttagcttattcttttccactattatttttgcttgtgtcactacttctccatatatataaatccgcttgataaataaatattaaaacaagt |
348 |
Q |
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| T |
46405361 |
ttcctacattttagctcattctttcccactattatttttgctcgtgtcattacttctccatatatgtaaatcctcttgataaataaatattaaaataagt |
46405460 |
T |
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| Q |
349 |
tta |
351 |
Q |
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||| |
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| T |
46405461 |
tta |
46405463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 9818711 - 9818798
Alignment:
| Q |
101 |
gaattgttttcagtctcctcttaattgtgggttaatatcataatttaataagaggtgaatgttgagagaaaataggagatagtggttcgtatga |
194 |
Q |
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| T |
9818711 |
gaattgttttaagtctcttcctaattgtgggttaacatcc------agtaagaggtgaatattgagagaaaataggagatagtggttcgtatga |
9818798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 3111 - 3187
Alignment:
| Q |
101 |
gaattgttttcagtctcctcttaattgtgggttaatatcataatttaataagaggtgaatgttgagagaaaatagga |
177 |
Q |
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| T |
3111 |
gaattgttttcagtctcttcctaattgtgggttagcaccagaatttaatataaggtgggtttggagagaaaatagga |
3187 |
T |
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