View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0968_low_1 (Length: 529)
Name: NF0968_low_1
Description: NF0968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0968_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 33 - 519
Target Start/End: Original strand, 41669718 - 41670202
Alignment:
| Q |
33 |
ataaggtgtacgtaccaccataccttgtcccaaaagacaaggtaacaatcctatttaatttttaaggtttcctctaacatgttgtctgaattgttgttga |
132 |
Q |
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| T |
41669718 |
ataaggtgtacgtaccaccacaccttgtcccaaaagacaaggtaacaatcctatttaatttttaatgtttcctctaacatgttgtctgaattgttgttga |
41669817 |
T |
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| Q |
133 |
tgcatgtcatgtgatgagacagagcttttcctatcagatgggtaagaaaggaagcagttggttctcatctgtgaagaaagttttcaagtcttcttctaag |
232 |
Q |
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| T |
41669818 |
tgcatgtcatgtgatgagacagagcttttcctatcagatgggtaagaaaggaagcagttggttctcatctgtgaagaaagttttcaagtcttcttctaag |
41669917 |
T |
|
| Q |
233 |
gactcaactttacaagagaacaaggtatttttcagagcctttctttctttctttttgaaaacattaatcaatgttaattttcttatcattcaccaaaact |
332 |
Q |
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| T |
41669918 |
gactcaactttacaagagaacaaggtatttttcagagcctttctttctttctttttgaaaacattaatcaatgttaattttcttatcattcaccaaaact |
41670017 |
T |
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| Q |
333 |
tgtttgtttaccgaattagaattttccattttgatcaagtctcaaaaacataataatcaaatgctcattatttaagttaaaatttcttttggaacatatt |
432 |
Q |
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| T |
41670018 |
tgtttgtttactgaattagaattttccattttgatcaagtctc--aaacataataatcaaatgctcattatttaagttaaaatttcttttggaacatatt |
41670115 |
T |
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| Q |
433 |
ttattttatttctttagtcatttgcacattaagtgatgctttttacatcaaaatgatttttacatttatgttaatttgagtttcatt |
519 |
Q |
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| T |
41670116 |
ttattttatttctttagtcatttgcacattaagtgatgctttttacatcaaaatgttttttacatttatgttaatttgagtttcatt |
41670202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 627368 - 627319
Alignment:
| Q |
179 |
aaaggaagcagttggttctcatctgtgaagaaagttttcaagtcttcttc |
228 |
Q |
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|||||| | ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
627368 |
aaaggaggaagttggttctcttctgtcaagaaagttttcaagtcttcttc |
627319 |
T |
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