View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0968_low_5 (Length: 300)
Name: NF0968_low_5
Description: NF0968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0968_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 65 - 283
Target Start/End: Original strand, 43933208 - 43933426
Alignment:
| Q |
65 |
actacagctgcaatttctaattatggttggtatatactatatataaatagaaatgattgaagaaacagaacttactgaaatgatatttggatggcgcaaa |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43933208 |
actacagctgcaatttctaattatggttggtatatactatatataaatagaaatgattgaagaaacagaacttactgaaatgatatttggatggcgcaaa |
43933307 |
T |
|
| Q |
165 |
cgaaacagcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatcca |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43933308 |
cgaaacagcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatcca |
43933407 |
T |
|
| Q |
265 |
tgttcttatagatacctct |
283 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
43933408 |
tgttcttatagatacctct |
43933426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 35132893 - 35132985
Alignment:
| Q |
171 |
agcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatcc |
263 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||| |||| |||||| || ||||| ||||| || ||||| ||||||||||| ||||||||| |
|
|
| T |
35132893 |
agcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttcatcttcttcaggctgactcacaagcttaattgcaacatcc |
35132985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University