View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0968_low_6 (Length: 300)

Name: NF0968_low_6
Description: NF0968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0968_low_6
NF0968_low_6
[»] chr3 (1 HSPs)
chr3 (1-300)||(51803568-51803864)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 51803568 - 51803864
Alignment:
Q  1 taatcaaatcctacctctgtccctaaatatataatccttttgaagttttaactgtgttaattattattttaccaacatactcctaattatgttatttagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||||||    
T  51803568 taatcaaatcctacctctgtccctaaatatataatccttttgaagttttaactgtgttaattattattttaccaacatacttctaattat---atttagt 51803664  T
Q  101 cttctgcaacctgtaataagtaagtcctatgatgaaaatataaattaaacttgttctctaaaggataagcttgtaaaacaatattaattggcaacaaatt 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51803665 tttctgcaacctgtaataagtaagtcctatgatgaaaatataaattaaacgtgttctctaaaggataagcttgtaaaacaatattaattggcaacaaatt 51803764  T
Q  201 tcatattaaggccaactttcttaattctcgtgatttggtcgatgatattaataggttagattgagaatttatttacctggggctaggtaaccataagttc 300  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51803765 tcatattaaggtcaactttcttaattctcgtgatttggtcgatgacattaataggttaaattgagaatttatttacctggggctaggtaaccataagttc 51803864  T

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