View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0969_low_1 (Length: 544)

Name: NF0969_low_1
Description: NF0969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0969_low_1
NF0969_low_1
[»] chr4 (15 HSPs)
chr4 (113-534)||(24714437-24714858)
chr4 (108-164)||(43392260-43392316)
chr4 (190-242)||(38552353-38552405)
chr4 (190-244)||(37306146-37306200)
chr4 (190-235)||(23037018-23037063)
chr4 (94-160)||(23037045-23037113)
chr4 (112-155)||(39632444-39632487)
chr4 (97-156)||(55982203-55982262)
chr4 (190-235)||(37306021-37306066)
chr4 (108-160)||(19023400-19023452)
chr4 (190-238)||(19023482-19023530)
chr4 (190-238)||(23037143-23037191)
chr4 (108-160)||(37306064-37306115)
chr4 (108-160)||(37991257-37991309)
chr4 (128-160)||(51821581-51821613)
[»] chr3 (6 HSPs)
chr3 (108-164)||(3731220-3731276)
chr3 (108-164)||(43788129-43788185)
chr3 (190-233)||(43788088-43788131)
chr3 (190-235)||(3731274-3731319)
chr3 (99-160)||(55200645-55200706)
chr3 (351-403)||(11474191-11474243)
[»] chr5 (21 HSPs)
chr5 (94-164)||(6031449-6031521)
chr5 (190-242)||(6029382-6029434)
chr5 (190-253)||(2021545-2021608)
chr5 (192-242)||(16214479-16214529)
chr5 (190-235)||(16214611-16214656)
chr5 (190-242)||(7116604-7116656)
chr5 (95-156)||(13562829-13562890)
chr5 (94-160)||(25954334-25954401)
chr5 (95-164)||(28617903-28617972)
chr5 (190-242)||(2021413-2021465)
chr5 (194-242)||(25954251-25954299)
chr5 (194-242)||(32384120-32384168)
chr5 (192-241)||(740751-740800)
chr5 (94-160)||(2021496-2021563)
chr5 (94-160)||(16214561-16214629)
chr5 (190-235)||(25954383-25954428)
chr5 (94-160)||(32384207-32384274)
chr5 (112-160)||(7116686-7116733)
chr5 (97-160)||(37047871-37047934)
chr5 (97-148)||(740656-740707)
chr5 (188-235)||(6031501-6031548)
[»] chr2 (9 HSPs)
chr2 (94-241)||(43377575-43377722)
chr2 (98-158)||(10291999-10292059)
chr2 (194-242)||(27639233-27639281)
chr2 (108-160)||(27639147-27639199)
chr2 (190-235)||(27639104-27639149)
chr2 (188-235)||(10292043-10292090)
chr2 (95-160)||(658722-658787)
chr2 (198-235)||(10110867-10110904)
chr2 (191-243)||(10110751-10110803)
[»] chr7 (10 HSPs)
chr7 (97-164)||(49077105-49077174)
chr7 (95-160)||(36286494-36286558)
chr7 (108-164)||(31488222-31488278)
chr7 (190-242)||(43079054-43079106)
chr7 (94-160)||(37445978-37446044)
chr7 (94-160)||(43079137-43079203)
chr7 (112-158)||(30843750-30843796)
chr7 (189-235)||(43079184-43079230)
chr7 (94-148)||(44746430-44746486)
chr7 (190-240)||(36286416-36286466)
[»] chr1 (6 HSPs)
chr1 (190-242)||(45333170-45333222)
chr1 (191-244)||(48469532-48469585)
chr1 (190-235)||(48469406-48469451)
chr1 (94-160)||(48469433-48469500)
chr1 (94-160)||(45333072-45333139)
chr1 (190-218)||(45333062-45333090)
[»] scaffold0291 (4 HSPs)
scaffold0291 (108-164)||(17443-17499)
scaffold0291 (94-164)||(17151-17224)
scaffold0291 (190-240)||(16936-16986)
scaffold0291 (132-164)||(17012-17044)
[»] scaffold0385 (3 HSPs)
scaffold0385 (105-160)||(12784-12838)
scaffold0385 (194-235)||(12837-12878)
scaffold0385 (192-225)||(11950-11983)
[»] chr6 (2 HSPs)
chr6 (190-242)||(6231844-6231896)
chr6 (190-242)||(32890086-32890138)
[»] chr8 (2 HSPs)
chr8 (94-160)||(11863369-11863437)
chr8 (102-160)||(15849674-15849732)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 113 - 534
Target Start/End: Original strand, 24714437 - 24714858
Alignment:
Q  113 aaaaagtggacatgctataatcatttaaaaattaatgattatttaattgttannnnnnnnnnnnnnnnnnnnnnatttgtgtgtgaccaaatagagggtc 212  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||                      || |||||| ||||||||||| ||||    
T  24714437 aaaaattggacatgctataatcatttaaaaattaatgattatttaattgttattttttctacttttttctttttatgtgtgtgcgaccaaatagaaggtc 24714536  T
Q  213 caaatctttgtgtccacccaagagtttctcgtgtttaaaacctcgttttcatttttaaaattctcaatctcctagttcaaggcaactttcttctcaagtt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24714537 caaatctttgtgtccacccaagagtttctcgtgtttaaaacctcgttttcatttttaaaattctcaatctcctagttcaaggcaactttcttctcaagtt 24714636  T
Q  313 ggtttttaaaatgtttgctaaggatgttatgttatttggttttaccttgaacattctttagcaaatctttaacggtagaaacaagttcatctctagtgag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24714637 ggtttttaaaatgtttgctaaggatgttatgttatttggttttaccttgaacattctttagcaaatctttaacggtagaaacaagttcatctctagtgag 24714736  T
Q  413 tttaaaagatacctcatcatcaatgtcactatcaaaatgtgaatcaggtctagaagatgtttccatgagtgagagattagtttcttcatcattttctgac 512  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24714737 tttagaagatacctcatcatcaatgtcactatcaaaatgtgaatcaggtctagaagatgtttccatgagtgagagattagcttcttcatcattttctgac 24714836  T
Q  513 tcttcatcaagatcctcctatg 534  Q
    ||||| ||||||||||||||||    
T  24714837 tcttcttcaagatcctcctatg 24714858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 43392260 - 43392316
Alignment:
Q  108 acacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaattgtta 164  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43392260 acacacaaaaatggacatgctataatcatttaaaaattaatgattatttaattgtta 43392316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 38552405 - 38552353
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctc 242  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  38552405 tgtgtgtgaccaaatagagggttcaaatccttgtgtccacccaagagtttctc 38552353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 37306146 - 37306200
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctcgt 244  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||||||||||||    
T  37306146 tgtgtgtgaccaaatagagggttcaaatccttgtatccacccaagagtttctcgt 37306200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 23037063 - 23037018
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaaga 235  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  23037063 tgtgtgtgaccaaatagagggaccaaatctttatgtccacccaaga 23037018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 23037045 - 23037113
Alignment:
Q  94 ctctatttggtcatacaca--aaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||| |||||  ||||| |||||||| ||||||||||| ||||| |||||||||||||||    
T  23037045 ctctatttggtcacacacaccaaaaaatggacatgttataatcatttgaaaatgaatgattatttaatt 23037113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 39632444 - 39632487
Alignment:
Q  112 aaaaaagtggacatgctataatcatttaaaaattaatgattatt 155  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  39632444 aaaaaagtggacatgctataatcgtttgaaaattaatgattatt 39632487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 55982262 - 55982203
Alignment:
Q  97 tatttggtcatacacaaaaaagtggacatgctataatcatttaaaaattaatgattattt 156  Q
    ||||||||||  |||||||||||  |||| |||||||||||||||||||||| |||||||    
T  55982262 tatttggtcacgcacaaaaaagtatacatactataatcatttaaaaattaattattattt 55982203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 37306066 - 37306021
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaaga 235  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||    
T  37306066 tgtgtgtaaccaaatagaaggtccaaatctttgtgtccactcaaga 37306021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 19023400 - 19023452
Alignment:
Q  108 acacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||| |||||| ||||| |||||||||||| ||||||||| |||||||||||    
T  19023400 acacacaaaagttgacatactataatcatttgaaaattaattattatttaatt 19023452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 19023482 - 19023530
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtt 238  Q
    |||||||||||||| || | ||| |||||||||||||||||||||||||    
T  19023482 tgtgtgtgaccaaacagtgagtctaaatctttgtgtccacccaagagtt 19023530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 23037143 - 23037191
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtt 238  Q
    ||||| ||| ||||||||||||| |||||||||||| ||||||||||||    
T  23037143 tgtgtatgatcaaatagagggtctaaatctttgtgttcacccaagagtt 23037191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 37306064 - 37306115
Alignment:
Q  108 acacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||    
T  37306064 acacaaaaaagtggacatgatataatcatttgaaaattagtga-tatttaatt 37306115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 37991257 - 37991309
Alignment:
Q  108 acacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||  ||||| ||||||||||| ||||||||| |||||||||||    
T  37991257 acacaaaaaagtacacatgttataatcatttgaaaattaatcattatttaatt 37991309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 51821581 - 51821613
Alignment:
Q  128 tataatcatttaaaaattaatgattatttaatt 160  Q
    |||||||||||||||| ||||||||||||||||    
T  51821581 tataatcatttaaaaactaatgattatttaatt 51821613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 3731276 - 3731220
Alignment:
Q  108 acacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaattgtta 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3731276 acacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaattgtta 3731220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 43788129 - 43788185
Alignment:
Q  108 acacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaattgtta 164  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||    
T  43788129 acacaaaaaagtgaacatgctaaaatcatttgaaaattaatgattatttaattgtta 43788185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 43788131 - 43788088
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaa 233  Q
    ||||||||| |||||||| ||| |||||||||||||||||||||    
T  43788131 tgtgtgtgatcaaatagatggttcaaatctttgtgtccacccaa 43788088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 3731274 - 3731319
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaaga 235  Q
    |||||||||| |||||||||||||||||  ||||||||||| ||||    
T  3731274 tgtgtgtgactaaatagagggtccaaattcttgtgtccacctaaga 3731319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 55200645 - 55200706
Alignment:
Q  99 tttggtcatacacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    |||||||| |||||| |||||  ||||||||| ||||||| ||||||| | |||||||||||    
T  55200645 tttggtcacacacaataaagttcacatgctatgatcatttgaaaattagtaattatttaatt 55200706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 11474243 - 11474191
Alignment:
Q  351 gttttaccttgaacattctttagcaaatctttaacggtagaaacaagttcatc 403  Q
    |||||||||| ||||||||||||||| ||||| | |||||| | |||||||||    
T  11474243 gttttaccttaaacattctttagcaagtctttgatggtagagataagttcatc 11474191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 6031521 - 6031449
Alignment:
Q  94 ctctatttggtcatacacaaa--aaagtggacatgctataatcatttaaaaattaatgattatttaattgtta 164  Q
    |||||||| |||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6031521 ctctatttagtcacacacaaacaaaagtggacatgctataatcatttaaaaattaatgattatttaattgtta 6031449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 6029434 - 6029382
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctc 242  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  6029434 tgtgtgtggccaaatagagggtccaaatctttgtgtctacccaagagtttctc 6029382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 2021545 - 2021608
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctcgtgtttaaaac 253  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||  |||||||| ||||    
T  2021545 tgtgtgtgaccaaatagagggtccaaatctttgtgtccactcaagaattattcgtgtttgaaac 2021608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 16214529 - 16214479
Alignment:
Q  192 tgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctc 242  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  16214529 tgtgtgaccaaatagagagtccaaatctttgtgttcacccaagagtttctc 16214479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 16214611 - 16214656
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaaga 235  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  16214611 tgtgtgtgaccaaatagagggttcaaatctttgtgtccacccaaga 16214656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 7116656 - 7116604
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctc 242  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  7116656 tgtgtgtgactaaatagaaggttcaaatctttgtgtccacccaagagtttctc 7116604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 13562829 - 13562890
Alignment:
Q  95 tctatttggtcatacacaaaaaagtggacatgctataatcatttaaaaattaatgattattt 156  Q
    |||||||| ||| ||||| |||||||||||||| |||||||||| ||||||||| |||||||    
T  13562829 tctatttgatcacacacataaaagtggacatgcaataatcatttgaaaattaattattattt 13562890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 25954401 - 25954334
Alignment:
Q  94 ctctatttggtcatacaca--aaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||| |||||  |||||||||||||| ||||||||||| ||||||||||| |||||||||    
T  25954401 ctctatttggtcacacacacaaaaaagtggacatgatataatcatttgaaaattaatga-tatttaatt 25954334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 28617903 - 28617972
Alignment:
Q  95 tctatttggtcatacacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaattgtta 164  Q
    ||||||| |||| ||||| |||| |  |||||||| |||||||| |||||||||||||||||||||||||    
T  28617903 tctatttagtcacacacataaaaataaacatgctaaaatcatttgaaaattaatgattatttaattgtta 28617972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 2021465 - 2021413
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctc 242  Q
    ||||| ||||||||||||||||||||||  |||| ||||||||||||||||||    
T  2021465 tgtgtctgaccaaatagagggtccaaattcttgtatccacccaagagtttctc 2021413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 25954299 - 25954251
Alignment:
Q  194 tgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctc 242  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||||||    
T  25954299 tgtgaccaaatagagggtccaaatccttgtgtcaatccaagagtttctc 25954251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 32384168 - 32384120
Alignment:
Q  194 tgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctc 242  Q
    |||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  32384168 tgtgaccaaatagaaggtccaaatccttgtgtccactcaagagtttctc 32384120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 740751 - 740800
Alignment:
Q  192 tgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttct 241  Q
    |||||||||||||| ||| |||||||| |||||||||||||| |||||||    
T  740751 tgtgtgaccaaataaaggatccaaatccttgtgtccacccaaaagtttct 740800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 2021563 - 2021496
Alignment:
Q  94 ctctatttggtcatacacaaaaaagt--ggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||| ||||| |||| |  ||||||| ||||||||||||||||||||||| |||||||||    
T  2021563 ctctatttggtcacacacacaaaaatatggacatgatataatcatttaaaaattaatga-tatttaatt 2021496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 16214629 - 16214561
Alignment:
Q  94 ctctatttggtcatacaca--aaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||| |||||  |||||||||||||| ||||||||||  ||||| ||| |||||||||||    
T  16214629 ctctatttggtcacacacacaaaaaagtggacatgttataatcattcgaaaatgaattattatttaatt 16214561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 25954383 - 25954428
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaaga 235  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||    
T  25954383 tgtgtgtgaccaaatagagggtcctaatccttgtgtccactcaaga 25954428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 32384274 - 32384207
Alignment:
Q  94 ctctatttggt--catacacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    |||||||||||  |||||||| ||||||| ||||| ||||||||||| ||||||||||| |||||||||    
T  32384274 ctctatttggttacatacacacaaaagtgaacatgatataatcatttgaaaattaatga-tatttaatt 32384207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 7116733 - 7116686
Alignment:
Q  112 aaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||||||||    
T  7116733 aaaaaagtggacatgatataatcatttgaaaattaatga-tatttaatt 7116686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 37047871 - 37047934
Alignment:
Q  97 tatttggtcatacaca-aaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    |||||||||| ||||| |||||||| |||||  |||||||||||||||||||||| |||||||||    
T  37047871 tatttggtcacacacacaaaaagtgaacatgacataatcatttaaaaattaatga-tatttaatt 37047934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 740656 - 740707
Alignment:
Q  97 tatttggtcatacacaaaaaagtggacatgctataatcatttaaaaattaat 148  Q
    ||||| |||| ||||||||||||| | ||| |||||||||||||||||||||    
T  740656 tatttagtcacacacaaaaaagtgaagatgatataatcatttaaaaattaat 740707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 6031501 - 6031548
Alignment:
Q  188 tttgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaaga 235  Q
    |||||||||||| ||||||||| |||||||  ||||||||||||||||    
T  6031501 tttgtgtgtgactaaatagaggatccaaattcttgtgtccacccaaga 6031548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 43377722 - 43377575
Alignment:
Q  94 ctctatttggtcatacacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaattgttannnnnnnnnnnnnnnnnnnnnnatttgtg 193  Q
    |||||||| |||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||                      || ||||    
T  43377722 ctctatttagtcacacataaaaaagtggatatgttataatcatttaaaaattaatgattatttaattgttattttttctacttttttatttttatgtgtg 43377623  T
Q  194 tgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttct 241  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  43377622 tgtgaccaaatagagggtccaaatctttgtgtccactcaagagtttct 43377575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 10292059 - 10291999
Alignment:
Q  98 atttggtcatacacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaa 158  Q
    ||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  10292059 atttggtcagacacaaaaaagtacacatgctataatcatttgaaaattaatgattatttaa 10291999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 27639233 - 27639281
Alignment:
Q  194 tgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctc 242  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||    
T  27639233 tgtgaccaaatagagggtccaaatctttgtgttcgcccaagagtttctc 27639281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 27639147 - 27639199
Alignment:
Q  108 acacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||    
T  27639147 acacaaaaaagtggacatgttataatcatttgaaaatgaattattatttaatt 27639199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 27639149 - 27639104
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaaga 235  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||    
T  27639149 tgtgtgtgaccaaatagaaggttcaaatctttgtttccacccaaga 27639104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 10292043 - 10292090
Alignment:
Q  188 tttgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaaga 235  Q
    ||||||| ||||||||| ||||||||||||  ||||||||||||||||    
T  10292043 tttgtgtctgaccaaatggagggtccaaattcttgtgtccacccaaga 10292090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 658722 - 658787
Alignment:
Q  95 tctatttggtcatacacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||| |||| ||||  | |||||||||| | |||| || ||||||||||||||||||    
T  658722 tctatttggtcatccacataaaaaagcacatgctatacttatttgaatattaatgattatttaatt 658787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 10110867 - 10110904
Alignment:
Q  198 accaaatagagggtccaaatctttgtgtccacccaaga 235  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  10110867 accaaatagagggtccaaatcattgtgtccactcaaga 10110904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 10110803 - 10110751
Alignment:
Q  191 gtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctcg 243  Q
    ||||||||||||||||||| | |||||| |||| | ||||||| |||||||||    
T  10110803 gtgtgtgaccaaatagaggattcaaatccttgtattcacccaaaagtttctcg 10110751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 49077174 - 49077105
Alignment:
Q  97 tatttggtcataca--caaaaaagtggacatgctataatcatttaaaaattaatgattatttaattgtta 164  Q
    ||||||||||||||  |||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  49077174 tatttggtcatacatacaaaaaagtggacatgttataattatttaaaaattaatgattatttaattgtta 49077105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 36286558 - 36286494
Alignment:
Q  95 tctatttggtcatacacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  36286558 tctatttgatcacacacaaaaaagtggacatgatataatcatttaaaaattaatga-tatttaatt 36286494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 31488222 - 31488278
Alignment:
Q  108 acacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaattgtta 164  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  31488222 acacaaaaaagtgaacatgttataatcatttaaaaattaatgattatttatttgtta 31488278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 43079106 - 43079054
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctc 242  Q
    ||||||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  43079106 tgtgtgtaaccaaataaagggtccaaatccttgtgtccacccaagagtttctc 43079054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 37445978 - 37446044
Alignment:
Q  94 ctctatttggtcatacacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||| |||  |||| || |||||  |||||||||||||||||||||||||||||||||    
T  37445978 ctctatttggtcacacatgaaaaggtagacatattataatcatttaaaaattaatgattatttaatt 37446044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 43079203 - 43079137
Alignment:
Q  94 ctctatttggtcatacacaa-aaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||| |||||| |||| |||||||| ||||||||||| ||||||||||| |||||||||    
T  43079203 ctctatttggtcacacacaataaaaatggacatgatataatcatttgaaaattaatga-tatttaatt 43079137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 30843750 - 30843796
Alignment:
Q  112 aaaaaagtggacatgctataatcatttaaaaattaatgattatttaa 158  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||||    
T  30843750 aaaaaagtgaacatgatataatcatttaaaaattaataattatttaa 30843796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 43079184 - 43079230
Alignment:
Q  189 ttgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaaga 235  Q
    |||||||||||||||||||||||||||||| ||||||| || |||||    
T  43079184 ttgtgtgtgaccaaatagagggtccaaatccttgtgtctactcaaga 43079230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 44746486 - 44746430
Alignment:
Q  94 ctctatttggtcatacaca--aaaaagtggacatgctataatcatttaaaaattaat 148  Q
    ||||||||||||| |||||  |||||||| ||||| |||||||||||||||||||||    
T  44746486 ctctatttggtcacacacacaaaaaagtgaacatgatataatcatttaaaaattaat 44746430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 36286466 - 36286416
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttc 240  Q
    ||||||||||||||||||  || |||||| |||||||||||||||| ||||    
T  36286466 tgtgtgtgaccaaatagaaagttcaaatccttgtgtccacccaagaatttc 36286416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 45333170 - 45333222
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctc 242  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45333170 tgtgtgtgaccaaatagagggtccaaatccttgtgtccacccaagagtttctc 45333222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 48469532 - 48469585
Alignment:
Q  191 gtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctcgt 244  Q
    ||||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  48469532 gtgtgtgaccaaatagaggattcaaatccttgtgtccacccaagagtttctcgt 48469585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 48469451 - 48469406
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaaga 235  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||    
T  48469451 tgtgtgtgaccaaatagagggtccaaatccttgtgtccactcaaga 48469406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 48469433 - 48469500
Alignment:
Q  94 ctctatttggtcatacac--aaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||| ||||  ||||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  48469433 ctctatttggtcacacacacaaaaaagtggacatgatataaacatttaaaaattaatga-tatttaatt 48469500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 45333072 - 45333139
Alignment:
Q  94 ctctatttggtcatacac--aaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||| ||||  ||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  45333072 ctctatttggtcacacacacaaaaaagtggacatgatataatcatttgaaaatgaatga-tatttaatt 45333139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 45333090 - 45333062
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatc 218  Q
    |||||||||||||||||||||||||||||    
T  45333090 tgtgtgtgaccaaatagagggtccaaatc 45333062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 17443 - 17499
Alignment:
Q  108 acacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaattgtta 164  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||    
T  17443 acacaaaaaagtgaacatgctaaaatcatttgaaaattaatgattatttaattgtta 17499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 17151 - 17224
Alignment:
Q  94 ctctatttggtcatacac--aaaaaagtggacatgctataatcatttaaaaattaatgatt-atttaattgtta 164  Q
    ||||||||||||| ||||  ||||||||| |||||||| |||||||| ||||||||||||| ||||||||||||    
T  17151 ctctatttggtcacacacacaaaaaagtgaacatgctaaaatcatttgaaaattaatgattaatttaattgtta 17224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 16986 - 16936
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttc 240  Q
    ||||||||| |||||| ||| ||||||||||||||||||| ||||||||||    
T  16986 tgtgtgtgatcaaataaaggatccaaatctttgtgtccactcaagagtttc 16936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 17044 - 17012
Alignment:
Q  132 atcatttaaaaattaatgattatttaattgtta 164  Q
    ||||||| |||||||||||||||||||||||||    
T  17044 atcatttgaaaattaatgattatttaattgtta 17012  T

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Target: scaffold0385 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 12838 - 12784
Alignment:
Q  105 catacacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| |||||||||    
T  12838 catacacaaaaaagtggacatgaaataatcatttaaaaattaatga-tatttaatt 12784  T

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Target: scaffold0385; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 12837 - 12878
Alignment:
Q  194 tgtgaccaaatagagggtccaaatctttgtgtccacccaaga 235  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  12837 tgtgaccatatagagggtccaaatctttgtgtccactcaaga 12878  T

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Target: scaffold0385; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 11983 - 11950
Alignment:
Q  192 tgtgtgaccaaatagagggtccaaatctttgtgt 225  Q
    ||||||||||||||||||||||||||| ||||||    
T  11983 tgtgtgaccaaatagagggtccaaatccttgtgt 11950  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 6231844 - 6231896
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctc 242  Q
    ||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||    
T  6231844 tgtgtgtgaccaaatagagggtctaaatttttatgttcacccaagagtttctc 6231896  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 32890138 - 32890086
Alignment:
Q  190 tgtgtgtgaccaaatagagggtccaaatctttgtgtccacccaagagtttctc 242  Q
    ||||||||| |||||| | ||||||||||||||| ||||||||||||||||||    
T  32890138 tgtgtgtgatcaaataaatggtccaaatctttgtatccacccaagagtttctc 32890086  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 11863437 - 11863369
Alignment:
Q  94 ctctatttggtcatacacaaaaaa--gtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||||||||||| ||| ||||||  || |||||| ||||||||||| |||||||||||||||| ||||    
T  11863437 ctctatttggtcacacaaaaaaaaaagtagacatgttataatcatttgaaaattaatgattattaaatt 11863369  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 15849732 - 15849674
Alignment:
Q  102 ggtcatacacaaaaaagtggacatgctataatcatttaaaaattaatgattatttaatt 160  Q
    ||||| ||||||||||||  | |||||| |||| ||| |||||||||||||||||||||    
T  15849732 ggtcacacacaaaaaagtataaatgctaaaatctttttaaaattaatgattatttaatt 15849674  T

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