View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0969_low_2 (Length: 483)
Name: NF0969_low_2
Description: NF0969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0969_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 210 - 475
Target Start/End: Original strand, 38121272 - 38121537
Alignment:
| Q |
210 |
gtcctaaactgagttttatttcacaatgtgaaccttatttgctttaatttgtgctttaattactctttacgtctcccataagctctgatttagccctatg |
309 |
Q |
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| T |
38121272 |
gtcctaaactgagttttatttcacaatgtgaaccttatttgctttaatttgtgctttaattactctttacgtctcccataagctctgatttagccctatg |
38121371 |
T |
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| Q |
310 |
ttttcgaaaatattctctgatgttttcgtttgtgtgatgaatcttgtgttatgttgaatggnnnnnnnagcgttattctttgactttaggattttcacat |
409 |
Q |
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| T |
38121372 |
ttttcgaaaatattctcgtatgttttcgtttgtgtgatgaatcttgtgttatgttgaatggtttttttagcgttattctttgactttaggattttcacat |
38121471 |
T |
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| Q |
410 |
cactgcttcatgcttttggggttttgcacttactatttgttttatgcttttgagtttttgtctgtg |
475 |
Q |
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| T |
38121472 |
cactgcttcatgcttttggggttttgcacttactatttgttttatgcttttgagtttttgtgtgtg |
38121537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 38121094 - 38121182
Alignment:
| Q |
31 |
ttttattttgtaatgtggtaactggtaatgttcatgtagtttttatcttaactttgcatgtttttattttgtaatgtggtaaacacaag |
119 |
Q |
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| T |
38121094 |
ttttattttgtaatgtggtaactggtaatgttcatgtagtttttatcttaactttgcatgtttttattttgtaatgtggtaaacacaag |
38121182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 14913857 - 14913905
Alignment:
| Q |
389 |
ttgactttaggattttcacatcactgcttcatgcttttggggttttgca |
437 |
Q |
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| T |
14913857 |
ttgacattagggctttcacatcactatttcatgcttttggggttttgca |
14913905 |
T |
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