View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0970_high_1 (Length: 621)
Name: NF0970_high_1
Description: NF0970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0970_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 48 - 280
Target Start/End: Complemental strand, 48183476 - 48183244
Alignment:
| Q |
48 |
catcatagtaggaagggaagaaatggagcaaatccacgtgaatgtcgatatctatgtgtaaagtcgcacgccaatcaccatgtggtccaccgccacttca |
147 |
Q |
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| T |
48183476 |
catcatagtaggaagggaagaaatggagcaaatccacgtgaatgtcgatatctatgtgtaaagtcgcatgccaatcaccatgtggtccaccgccacttca |
48183377 |
T |
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| Q |
148 |
cgcactgtgttacatttctaggatgcacaaaaaccacatcggtcgctacatgtcagaatcggtattgttcgactactactcttatctctctctctttttc |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48183376 |
cgcactgtgttacatttctaggatgcacaaaaaccacatcggtcgctacatgtcagaatcggtattgttcgactactactcttatctctctctctctttc |
48183277 |
T |
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| Q |
248 |
aaatcaatgtttagagtttagacatcatttatt |
280 |
Q |
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|| |||||||||||||||||||||||||||||| |
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| T |
48183276 |
aactcaatgtttagagtttagacatcatttatt |
48183244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 275 - 410
Target Start/End: Complemental strand, 48181823 - 48181692
Alignment:
| Q |
275 |
tttatttttctatatcttcaaccatannnnnnn--ccttatatttatatcttcttatcacattcacatctattacattattattctccttttctctttac |
372 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48181823 |
tttatttttctatatcttcaaccatatttttttttccttatatttatatcttcttatcacat------ctattacattattattctccttttctctttac |
48181730 |
T |
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| Q |
373 |
ctcaagttgtatgcatccaataaggtgcatggtgcaca |
410 |
Q |
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| T |
48181729 |
ctcaagttttatgcatccaataaggtgcatggtgcaca |
48181692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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