View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0970_low_1 (Length: 805)
Name: NF0970_low_1
Description: NF0970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0970_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 53 - 464
Target Start/End: Complemental strand, 48183655 - 48183244
Alignment:
| Q |
53 |
ggagggagtatgtgtattaagtttggtcccacaaagtgcaaagcagtactactactgggtcatgcaagaagatataatgaaccacgtaggtacaatatgg |
152 |
Q |
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| T |
48183655 |
ggagggagtatgtgtattaagtttggtcccacaaactgcaaagcagtactactactgggtcatgcaagaagatataatgaaccacgtaggtacaatatgg |
48183556 |
T |
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| Q |
153 |
aaacaggaattcattgatttaagagtgaatatgaaagacagaggtttgaaagtcacggtttgtggggatgacaaggacacatcatagtaggaagggaaga |
252 |
Q |
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| T |
48183555 |
aaacaggaattcattgatttaagagtgaatatgaaagacaaaggtttgaaagtcacggtttgtggggatgaaaaggacacatcatagtaggaagggaaga |
48183456 |
T |
|
| Q |
253 |
aatggagcaaatccacgtgaatgtcgatatctatgtgtaaagtcgcacgccaatcaccatgtggtccaccgccacttcacgcactgtgttacatttctag |
352 |
Q |
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| T |
48183455 |
aatggagcaaatccacgtgaatgtcgatatctatgtgtaaagtcgcatgccaatcaccatgtggtccaccgccacttcacgcactgtgttacatttctag |
48183356 |
T |
|
| Q |
353 |
gatgcacaaaaaccacatcggtcgctacatgtcagaatcggtattgttcgactactactcttatctctctctctttttcaaatcaatgtttagagtttag |
452 |
Q |
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| T |
48183355 |
gatgcacaaaaaccacatcggtcgctacatgtcagaatcggtattgttcgactactactcttatctctctctctctttcaactcaatgtttagagtttag |
48183256 |
T |
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| Q |
453 |
acatcatttatt |
464 |
Q |
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| T |
48183255 |
acatcatttatt |
48183244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 459 - 594
Target Start/End: Complemental strand, 48181823 - 48181692
Alignment:
| Q |
459 |
tttatttttctatatcttcaaccatannnnnnn--ccttatatttatatcttcttatcacattcacatctattacattattattctccttttctctttac |
556 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48181823 |
tttatttttctatatcttcaaccatatttttttttccttatatttatatcttcttatcacat------ctattacattattattctccttttctctttac |
48181730 |
T |
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| Q |
557 |
ctcaagttgtatgcatccaataaggtgcatggtgcaca |
594 |
Q |
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| T |
48181729 |
ctcaagttttatgcatccaataaggtgcatggtgcaca |
48181692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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