View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0970_low_3 (Length: 457)
Name: NF0970_low_3
Description: NF0970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0970_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 30 - 446
Target Start/End: Original strand, 42661629 - 42662033
Alignment:
| Q |
30 |
tcatcagcctgcagatttgttccttctcagattctgtcatccatgcatggctctgaaattcataattttccgttagtgtctgtctaaaaattaccaatga |
129 |
Q |
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| T |
42661629 |
tcatcagcctgcagatttgttccttctcagattctgtcatccatgcatggctctgaaattcataattttccgttagtgtctgtctaaaaattaccaatga |
42661728 |
T |
|
| Q |
130 |
aacat---gtgtactaaatgaaaaaacaaatctctttaaatcttatgagacaaatattattaatttgatcctcttattatttgaagcatatttactatta |
226 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42661729 |
aacatcatgtgtactaaatgaaaaa-caaatctctttaaatcttatgagacaaatattattaatttgatcctcttatt--------------tactatta |
42661813 |
T |
|
| Q |
227 |
agcatatagagaaagtaggcaaccttgaggtagatatcaattgcacggtaaataccatcatccaaggtcctagcacaatcaggaataacagcagcaagtg |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42661814 |
agcatatagagaaagtaggcaaccttgaggtagatatcaattgcacggtaaataccatcatccaaggtcctagcacaatcaggaataacagcagcaagtg |
42661913 |
T |
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| Q |
327 |
actgaaattttggaaatttcaagttgacatcaggtgctacttcagctaagtaactatccatcaaatcagcaacttttgtcattggagtagcacgttgaca |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42661914 |
actgaaattttggaaatttcaagttgacatcaggtgctacttcagctaagtaactatccatcaaatcagcaacttttgtcattggagtagcacgttgaca |
42662013 |
T |
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| Q |
427 |
atttgcaccaatgcgtctct |
446 |
Q |
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|||| || |||||||||||| |
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| T |
42662014 |
atttccaacaatgcgtctct |
42662033 |
T |
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