View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0970_low_4 (Length: 344)
Name: NF0970_low_4
Description: NF0970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0970_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 48181566 - 48181416
Alignment:
| Q |
1 |
ttggatggattggatatatttcaaacatcatgtgtataagattacgatttgaagatgaaaagtaagg-ttctctatgaattgtaatttgatattttcttt |
99 |
Q |
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| T |
48181566 |
ttggatggattggatatatttcaaacatcatgtgtataagattacgatttgaagatgaaaagtaaggattctctatgaattgtaatttaatattttcttt |
48181467 |
T |
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| Q |
100 |
gtaagtgtaaatgttctagagatttttgttgccatgttctataatcaattg |
150 |
Q |
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| T |
48181466 |
gtaagtgtaaatgttctagagatttttgttgccatgttctataatcaattg |
48181416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 225 - 335
Target Start/End: Complemental strand, 48181337 - 48181228
Alignment:
| Q |
225 |
aaaccagccttacaagaactgttatnnnnnnngtatatgtgacaaatagagggactaactacgtaattatgccaacannnnnnngtggtatattgatcag |
324 |
Q |
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|||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
48181337 |
aaaccaaccttacaagaactgttataaaaac-gtacatgtgacaaatagagggactaactacgtaattataccaacatttttttgtggtatattgatcag |
48181239 |
T |
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| Q |
325 |
ggtgcctatga |
335 |
Q |
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| T |
48181238 |
ggtgcctatga |
48181228 |
T |
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