View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0970_low_5 (Length: 263)

Name: NF0970_low_5
Description: NF0970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0970_low_5
NF0970_low_5
[»] chr4 (4 HSPs)
chr4 (45-209)||(55203337-55203500)
chr4 (87-158)||(55205844-55205915)
chr4 (55-111)||(10032286-10032342)
chr4 (55-105)||(1856676-1856726)
[»] chr7 (3 HSPs)
chr7 (59-108)||(46164460-46164509)
chr7 (59-108)||(46169318-46169367)
chr7 (84-157)||(46513512-46513583)
[»] chr1 (4 HSPs)
chr1 (59-108)||(48990904-48990953)
chr1 (63-108)||(25491998-25492043)
chr1 (59-108)||(48986045-48986094)
chr1 (55-108)||(52433030-52433083)
[»] scaffold0060 (1 HSPs)
scaffold0060 (55-108)||(11167-11221)
[»] chr3 (2 HSPs)
chr3 (78-112)||(34374787-34374821)
chr3 (55-112)||(34374007-34374064)
[»] chr2 (1 HSPs)
chr2 (55-111)||(18259213-18259270)
[»] chr6 (1 HSPs)
chr6 (55-111)||(6356377-6356433)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 45 - 209
Target Start/End: Original strand, 55203337 - 55203500
Alignment:
Q  45 attcgtttattgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacatcggcnnnnnnnaattaaaaaacaaaatagagga 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||    
T  55203337 attcgtttattgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacatcagctttttt-aattaaaaaacaaaatagagga 55203435  T
Q  145 gaaacacgcgcttcctctttctcaagcgtatctcactcatcgccatgcctcctgccggcgccgcc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203436 gaaacacgcgcttcctctttctcaagcgtatctcactcatcgccatgcctcctgccggcgccgcc 55203500  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 55205915 - 55205844
Alignment:
Q  87 ttcagattaaaaataaacaaaacatcggcnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgcttc 158  Q
    |||||||||||||||||||||||||| |        ||||||||||||||||||||||||||||||||||||    
T  55205915 ttcagattaaaaataaacaaaacatcagttttttttaattaaaaaacaaaatagaggagaaacacgcgcttc 55205844  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 10032342 - 10032286
Alignment:
Q  55 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacat 111  Q
    |||||||||||||  | ||| |||||||||| |||||||||||||||||||||||||    
T  10032342 tgaatgacatgtgacaaaaaaggattcaatgattcagattaaaaataaacaaaacat 10032286  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 1856726 - 1856676
Alignment:
Q  55 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaaca 105  Q
    |||||||||||||| | ||| ||||||||||||||||||| ||||||||||    
T  1856726 tgaatgacatgtggcaaaaaaggattcaatggttcagatttaaaataaaca 1856676  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 46164460 - 46164509
Alignment:
Q  59 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  46164460 tgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 46164509  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 46169367 - 46169318
Alignment:
Q  59 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    |||||||||| | ||| |||||||||| ||||||||||||||||||||||    
T  46169367 tgacatgtggcaaaaatggattcaatgattcagattaaaaataaacaaaa 46169318  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 46513583 - 46513512
Alignment:
Q  84 tggttcagattaaaaataaacaaaacatcggcnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgctt 157  Q
    ||||||||||||||||||||||||||||| ||       |||||||||| |||||||||||| |||||||||||    
T  46513583 tggttcagattaaaaataaacaaaacatcagc-ttttttaattaaaaaaaaaaatagaggag-aacacgcgctt 46513512  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 48990953 - 48990904
Alignment:
Q  59 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  48990953 tgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 48990904  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 25492043 - 25491998
Alignment:
Q  63 atgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    |||||| | ||| |||||||||||||||||||||||||||||||||    
T  25492043 atgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 25491998  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 48986045 - 48986094
Alignment:
Q  59 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    |||||||||| | ||| |||||||||| ||||||||||||||||||||||    
T  48986045 tgacatgtggcaaaaatggattcaatgattcagattaaaaataaacaaaa 48986094  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 52433030 - 52433083
Alignment:
Q  55 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    ||||||||| |||| | ||| | |||||||||||||||||||||||||||||||    
T  52433030 tgaatgacacgtggcacaaatgaattcaatggttcagattaaaaataaacaaaa 52433083  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 11167 - 11221
Alignment:
Q  55 tgaatgacatgtgg-aagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||||| |||||    
T  11167 tgaatgacatgtggtaaaaaaaggattcaatggttcagattaaaaataatcaaaa 11221  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 112
Target Start/End: Complemental strand, 34374821 - 34374787
Alignment:
Q  78 attcaatggttcagattaaaaataaacaaaacatc 112  Q
    |||||||||||||||||||||||||||||||||||    
T  34374821 attcaatggttcagattaaaaataaacaaaacatc 34374787  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 34374007 - 34374064
Alignment:
Q  55 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacatc 112  Q
    |||||||||||||| | |||  |||||||||||| |||||||||||||| ||||||||    
T  34374007 tgaatgacatgtggcaaaaaatgattcaatggtttagattaaaaataaataaaacatc 34374064  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 18259270 - 18259213
Alignment:
Q  55 tgaatgacatgtggaagaaagggattcaatggttcaga-ttaaaaataaacaaaacat 111  Q
    |||||||||||||| | |||  |||||||||||||| | |||||||||||||||||||    
T  18259270 tgaatgacatgtggcaaaaaaagattcaatggttcatatttaaaaataaacaaaacat 18259213  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 6356433 - 6356377
Alignment:
Q  55 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacat 111  Q
    |||||||||||||| | |||  |||||||| ||||||||| ||||||| ||||||||    
T  6356433 tgaatgacatgtggtaaaaatcgattcaattgttcagatttaaaataatcaaaacat 6356377  T

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