View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0971_low_2 (Length: 698)
Name: NF0971_low_2
Description: NF0971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0971_low_2 |
 | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 3 - 654
Target Start/End: Original strand, 43435150 - 43435801
Alignment:
| Q |
3 |
tatttagatgaagagacacatttgacgatttcgacgagtttaaaaagggaggagttgtggagtgatgttgttgtgcttccatattgttataaagggatgc |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| |||| ||||||||| | ||| ||||||| |||||| ||| || ||| ||||||||||||| |
|
|
| T |
43435150 |
tatttagatgaagagacgtatttgacgatttctacgggtttgaaaagggagaatttgaagagtgatattgttgcactttcacatttctataaagggatgc |
43435249 |
T |
|
| Q |
103 |
ttgagcaaaatgcaatgcggaatgttgtcaaaaaggtggttggcattatttcaaggtctgattgggatgatatggttgagaatgaactggagaaggttaa |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43435250 |
ttgagcaaaatgcaatgcagaatgttgttaaaaaggtggttggcattatttcagggtctgattgggatgataaggttgagaatgaactggagaaggttaa |
43435349 |
T |
|
| Q |
203 |
aattcagctttcggataatttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatct |
302 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43435350 |
aattcagctttcggataatttcgtgattagggttatgaaagagcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatct |
43435449 |
T |
|
| Q |
303 |
ggttatcaacagaatacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaaga |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43435450 |
ggttatcaacagaatacagtgacttataatgcagttgctagagttcttccaaggatggaatcaattgaggagttttggagtattattgaggagatgaaga |
43435549 |
T |
|
| Q |
403 |
gtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatat |
502 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43435550 |
gtgtcggtcatgaattggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatat |
43435649 |
T |
|
| Q |
503 |
gatggatagttcatataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccaaatttggatttagttttcagggta |
602 |
Q |
| |
|
||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
43435650 |
gatggatagttcatataagccttcagttctggattgcattatgcttttaaagagcatctctgcaagcgataagccgaatttggatttagttttcagggta |
43435749 |
T |
|
| Q |
603 |
gctaagaaatttgagtcatcagggtatactctttccaaggcagtctatgatg |
654 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43435750 |
gctaagaaattcgagtcatcagggtatactctttccaaggcagtctatgatg |
43435801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 217 - 654
Target Start/End: Original strand, 43443558 - 43443995
Alignment:
| Q |
217 |
ataatttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaa |
316 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43443558 |
ataatttcgtgattagggttatgaaagagcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaa |
43443657 |
T |
|
| Q |
317 |
tacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggtcatgaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43443658 |
tacagtgacttataatgcagttgctagagttcttccaaggatggaatcaattgaggagttttggagtattattgaggagatgaagagtgtcggtcatgaa |
43443757 |
T |
|
| Q |
417 |
ttggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcat |
516 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43443758 |
ttggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcat |
43443857 |
T |
|
| Q |
517 |
ataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccaaatttggatttagttttcagggtagctaagaaatttga |
616 |
Q |
| |
|
||||||| ||||||| || ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43443858 |
ataagccttcagttctggattgcattatgcttttaaagagcatctctgcaagcgataagccgaatttggatttagttttcagggtagctaagaaattcga |
43443957 |
T |
|
| Q |
617 |
gtcatcagggtatactctttccaaggcagtctatgatg |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43443958 |
gtcatcagggtatactctttccaaggcagtctatgatg |
43443995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 90 - 654
Target Start/End: Original strand, 43426732 - 43427296
Alignment:
| Q |
90 |
tataaagggatgcttgagcaaaatgcaatgcggaatgttgtcaaaaaggtggttggcattatttcaaggtctgattgggatgatatggttgagaatgaac |
189 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||| ||||||||||||| || | |||||||||||| |
|
|
| T |
43426732 |
tataaagggatgcttgagcaggatgcaatgcagagtgttgtcaaaaaggtggttggtattatttcagggtctgattgggacaatgagattgagaatgaac |
43426831 |
T |
|
| Q |
190 |
tggagaaggttaaaattcagctttcggataatttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggt |
289 |
Q |
| |
|
| ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43426832 |
tcgagaaggttaaaattcaactttcggacaatttcgtgattagggttatgaaagagcttcgaaatagtcctttaaaggcttataagttttttcattgggt |
43426931 |
T |
|
| Q |
290 |
tgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattctt |
389 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |
|
|
| T |
43426932 |
tggaaagcaatctggttatctacagaatacagtgacttataatgcagttgctagagttcttcctagaatggagtcaattgagaagttttggagtattctt |
43427031 |
T |
|
| Q |
390 |
gaggagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagc |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||| |
|
|
| T |
43427032 |
gaggagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagc |
43427131 |
T |
|
| Q |
490 |
tttatgagcatatgatggatagttcatataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccaaatttggattt |
589 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| ||| || ||||| |||||||||||||| | ||| ||| |||||||| |||||||||| |
|
|
| T |
43427132 |
tttacgagcatatgatggatagttcatataagcctacagctccggattgcattgtgcttttaaagagcctatctacaaaggataagccagatttggattt |
43427231 |
T |
|
| Q |
590 |
agttttcagggtagctaagaaatttgagtcatcagggtatactctttccaaggcagtctatgatg |
654 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43427232 |
agttttcagggtaactaagaaatttgagtcaacagggtatactctttccaaggcagtctatgatg |
43427296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 211 - 531
Target Start/End: Original strand, 43422275 - 43422595
Alignment:
| Q |
211 |
tttcggataatttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatca |
310 |
Q |
| |
|
||||||||| ||| |||| ||||| |||||||||||||| |||| ||||||| ||| || |||||| |||||||||||||||||||||||||||| |
|
|
| T |
43422275 |
tttcggatagttttgtgatacgggttttgaaagagcttcgaagttgtcctttaaagggttacaactttttttattgggttgggaagcaatctggttatca |
43422374 |
T |
|
| Q |
311 |
acagaatacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggt |
410 |
Q |
| |
|
||| ||| | |||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
43422375 |
acataatgctgtgacttacaatgcagttgctagagttcttgctaggatggattcaattgaggagttttggagtattcttgcggagatgaagagtgtgaat |
43422474 |
T |
|
| Q |
411 |
catgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggata |
510 |
Q |
| |
|
|||||||||| |||||||||| || |||||| | | |||| || ||||||| |||||||| |||||||||| |||||||| |||| |||||||||| |
|
|
| T |
43422475 |
tatgaattggagattgatacttatatgaagataacaatgcagtttgtaaagaatcagatgatgaaggatgctgttaagctttacgagcttatgatggatg |
43422574 |
T |
|
| Q |
511 |
gttcatataagccatcagttc |
531 |
Q |
| |
|
|||||||| ||||||| |||| |
|
|
| T |
43422575 |
gttcatatgagccatcggttc |
43422595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Original strand, 20631 - 21264
Alignment:
| Q |
1 |
tctatttagatgaagagacacatttgacgatttcgacgagtttaaaaagggaggagttgtggagtgatgttgttgtgcttccatattgttataaagggat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| | |||||||||| ||||| ||||| |||||||||||||| |||| || ||| || |||||||| |
|
|
| T |
20631 |
tctatttagatgaagagacacatgtgacgatttcaaggagtttaaaaggggagaagttgaagagtgatgttgttgcgctttcacatttctacaaagggat |
20730 |
T |
|
| Q |
101 |
gcttgagcaaaatgcaatgcggaatgttgtcaaaaaggtggttggcattatttcaaggtctgattgggatgatatggttgagaatgaactggagaaggtt |
200 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20731 |
gcttgagcagaatgcaatgcagaatgttgtcaaaaaggtggttggcattacttaagggtctgattgggatgataaggttgagaatgaactggagaaggtt |
20830 |
T |
|
| Q |
201 |
aaaattcagctttcggataatttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaat |
300 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
20831 |
aaaattc---tttcggataatttcgtgattagggtcatgaaagagcttcgagatagtcctttaaaggcttataagttttttcattgggttggaaagaaat |
20927 |
T |
|
| Q |
301 |
ctggttatcaacagaatacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaa |
400 |
Q |
| |
|
|| ||||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
20928 |
ctagttatcaacggaatacagttacttataatgcagttgctagagttcttcctagagtggagtcaattgaagagttttggagtattcttgaggagacgaa |
21027 |
T |
|
| Q |
401 |
gagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcat |
500 |
Q |
| |
|
||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21028 |
gagtgtctgtcatgaattgg-----------------aggatatcgaggcagcttcaaaagaataagatgatggaggatgttgtcaagctttatgagcat |
21110 |
T |
|
| Q |
501 |
atgatggatagttcatataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccaaatttggatttagttttcaggg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
21111 |
atgatggatagttcatataagccatcagttctggattgcattatgcttttaaagagcacatctgcaagcgataagctggatttggatttagttttcaggg |
21210 |
T |
|
| Q |
601 |
tagctaagaaatttgagtcatcagggtatactctttccaaggcagtctatgatg |
654 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
21211 |
tagctaagaaattcgagtaaacagggtatactctttccaaggcagtctatgatg |
21264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 256 - 654
Target Start/End: Complemental strand, 40186396 - 40186008
Alignment:
| Q |
256 |
gtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctagagttcttccaag |
355 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| ||||||||| | | |
|
|
| T |
40186396 |
gtcctttaaaggcttacaagttttttcattgggttgggaagcaatctggttatcaacataataccgtgacttacaattatgttgcaagagttcttgctaa |
40186297 |
T |
|
| Q |
356 |
gatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagctt |
455 |
Q |
| |
|
|||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
40186296 |
gatggactcaattgaggagttttggagta---tcgaggagatgaagagtgtcggtcatgaattggatctcaatacttccataaagatatcgaggcagctt |
40186200 |
T |
|
| Q |
456 |
caaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcatataagccatcagttccagactgcatcatgcttttaaaga |
555 |
Q |
| |
|
||| |||||| ||||||||| | |||| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
40186199 |
caagagaataggatgatgga---------cgggcttcatgagcatatgatggatagttcatacaagccatcagttctggactgcattatgcttttaaaga |
40186109 |
T |
|
| Q |
556 |
gcatctctgcaagctataagccaaatttggatttagttttcagggtagctaagaaatttgagtcatca--gggtatactctttccaaggcagtctatgat |
653 |
Q |
| |
|
|||| ||| |||| || ||||| |||||||||| |||||||||||||||| ||||| ||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
40186108 |
acatcgctgaaagcgatgagccaggtttggatttatttttcagggtagctaacaaattcgagtcgacagggggtatactctttccaaggaagtctatgat |
40186009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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