View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0971_low_7 (Length: 267)
Name: NF0971_low_7
Description: NF0971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0971_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 34675366 - 34675159
Alignment:
| Q |
20 |
gtgagggaggagttcgttgaggatctttgtgacgttgcttgcgccgaagatcttgtgaacgtttgcaaatttttgaggttcttccggtggaaagtatggt |
119 |
Q |
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| T |
34675366 |
gtgagggaggagttcgttgaggatctttgtgacgttgcttgcgccgaagatcttgtgaacgtttgcaaatttttgaggttcttccggtggaaagtatggt |
34675267 |
T |
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| Q |
120 |
gcaaagatgcagcctggcatgcattttcgacgaaggaatttgcaggctgcacatggtgaattgtatgagcttgatgatgccattttttctcctgcgctac |
219 |
Q |
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| T |
34675266 |
gcaaagatgcagcctggcatgcattttcgacgaaggaatttgcaggctgcacatggtgaattgtatgagcttgatgatgccattttttctcctgcgctac |
34675167 |
T |
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| Q |
220 |
aaagcaat |
227 |
Q |
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| T |
34675166 |
aaagcaat |
34675159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 43583355 - 43583166
Alignment:
| Q |
20 |
gtgagggaggagttcgttgaggatctttgtgacgttgcttgcgccgaagatcttgtgaacgtttgcaaatttttgaggttcttccggtggaaagtatggt |
119 |
Q |
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| T |
43583355 |
gtgagggagaagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggt |
43583256 |
T |
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| Q |
120 |
gcaaagatgcagcctggcatgcattttcgacgaaggaatttgcaggctgcacatggtgaattgtatgagct---tgatgatgccattttt |
206 |
Q |
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| T |
43583255 |
gcaaagatgcatcctggcatgcattttctcctcaagaatttgcaggcagcacaaggtgaattgtatgagctggatgatgatgccattttt |
43583166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 12360773 - 12360861
Alignment:
| Q |
54 |
ttgcttgcgccgaagatcttgtgaacgtttgcaaatttttgaggttcttccggtggaaagtatggtgcaaagatgcagcctggcatgca |
142 |
Q |
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|||||||| || || || |||||||| |||||||||||||| |||||||| ||||| || ||||| ||||| ||||| |||||||||| |
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| T |
12360773 |
ttgcttgcaccaaatattttgtgaacatttgcaaatttttgtggttcttctggtgggaaatatggagcaaatatgcaatctggcatgca |
12360861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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