View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0972_low_1 (Length: 428)
Name: NF0972_low_1
Description: NF0972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0972_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 54 - 399
Target Start/End: Complemental strand, 8830635 - 8830292
Alignment:
| Q |
54 |
gatcttgtgtattaattaatcaatacatgcaaatcatatgaaaatatatttttattcaactcaagtccaaaaggatctattattaaaattcaaaaactat |
153 |
Q |
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| T |
8830635 |
gatcttgtgtattaattaatcaatacatgcaaatcatatgaaaatatatttttattcaactcaagtccaaaaggatctattattaaaattaaaaaactaa |
8830536 |
T |
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| Q |
154 |
atgacatttcatcaaaagttcatattgttcatgtgccttcacttcaaaaggagatgaaatctagaaactactacaaatctaaaccttgaacatgtccaca |
253 |
Q |
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| T |
8830535 |
--gacatttcatcaaaagttcatattgttcatgtgccttcacttcaaaaggagatgaaatctagaaactactacaaatctaaaccttgaacatgtccaca |
8830438 |
T |
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| Q |
254 |
catgtttcttttgaaagtcctctattccagaatttgttgtagtattcattgtattcaaactctttgtattgaacagtatgataattgtctatgagttgag |
353 |
Q |
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| T |
8830437 |
catgtttcttttgaaagtcctctattccagaatttgttgtagtattcattgtattcaaactctttgtattgaacagtatgataattgtctatgagttgag |
8830338 |
T |
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| Q |
354 |
gagctggtcttatgattgcatctggtgatggacagtagaacgttgg |
399 |
Q |
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| T |
8830337 |
gagctggtcttatgattgcatctggtgatggacagtagaacgttgg |
8830292 |
T |
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