View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0973_low_1 (Length: 432)
Name: NF0973_low_1
Description: NF0973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0973_low_1 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 432
Target Start/End: Original strand, 35364181 - 35364603
Alignment:
| Q |
9 |
gatatgaatgattaagtgttaattacatttttatcccctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattctcggctgatgacggtcc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35364181 |
gatatgaatgattaagtgttaattacatttttatcccctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattctcggctgatgacggtcc |
35364280 |
T |
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| Q |
109 |
cttgtatagtatttttagcactaataaggagtcattttagagttaatttgacaagttttaaaatgttttagtttagtgtctaaaatgaaccgtctaattt |
208 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35364281 |
cttgtatagtatttttagcactaacaaggagtcattttagagttaatttgataagttttaaaatgttttagtttagtgtctaaaatgaaccgtctaattt |
35364380 |
T |
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| Q |
209 |
aaaattaatggttgggatttaaaacagctatagcttgcgatgaatatcacattcctgttttaagtcaacaagagtaatatgacatggattccacaacttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35364381 |
aaaattaatggttgggatttaaaacagctatagcttgcaatgaatatcacattcctgttttaagtcaacaagagtagtatgacatggattccacaacttg |
35364480 |
T |
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| Q |
309 |
ttgattttgggaccacaaagc-cctagctgttgcacatgactacttctctttaaataaccaaccatatatctttgatctatatcaaaatacatattcttc |
407 |
Q |
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||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35364481 |
ttgattttgggaccacaaagcatctatctattgcacatgactacttctctttaaataaccaaccatatatctttgatc--tatcaaaatacatattcttc |
35364578 |
T |
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| Q |
408 |
aatagaaaaatgaggactcttatgt |
432 |
Q |
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|||||||||||||||||| |||||| |
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| T |
35364579 |
aatagaaaaatgaggacttttatgt |
35364603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 35404427 - 35404473
Alignment:
| Q |
46 |
ctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattct |
92 |
Q |
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| T |
35404427 |
ctttgcttgcattgaaggaaaagcttacaaatggtgtaccagattct |
35404473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 35752663 - 35752709
Alignment:
| Q |
46 |
ctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattct |
92 |
Q |
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||||||||||||| ||||||||||||| ||||||||||| ||||||| |
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| T |
35752663 |
ctttgcttgctttaaaggaaaagcttacaaatggtgtaccagattct |
35752709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 35364706 - 35364742
Alignment:
| Q |
46 |
ctttgcttgctttgaaggaaaagcttaaaaatggtgt |
82 |
Q |
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|||||||||||||||| |||||||||| ||||||||| |
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| T |
35364706 |
ctttgcttgctttgaaagaaaagcttacaaatggtgt |
35364742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 6e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 10422480 - 10422306
Alignment:
| Q |
8 |
tgatatga-atgattaagtgttaattacatttttatcccctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattctcggctgatgacggt |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10422480 |
tgatatgatatgattaagtgttaattacatttttatctcctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattctcggctgatgacggt |
10422381 |
T |
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| Q |
107 |
cccttgtatagtatttttagcactaataaggagtcattttagagttaatttgacaagttttaaaatgttttagtt |
181 |
Q |
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|| ||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10422380 |
ccattgtatagtatttttagcattgataaggagtcattttagaggcaatttgacaagttttaaaatgttttagtt |
10422306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 10422190 - 10422133
Alignment:
| Q |
179 |
gtttagtgtctaaaatgaaccgtctaatttaaaattaatggttgggatttaaaacagc |
236 |
Q |
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| T |
10422190 |
gtttagtgtctaatatgaaccgtctaatttaaaattaatggttgggatttaaaacagc |
10422133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 10412311 - 10412265
Alignment:
| Q |
46 |
ctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattct |
92 |
Q |
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| T |
10412311 |
ctttgcttgctttgaaggaaaagcttacaaatggtgtacaagattct |
10412265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 10418034 - 10417988
Alignment:
| Q |
46 |
ctttgcttgctttgaaggaaaagcttaaaaatggtgtacaagattct |
92 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
10418034 |
ctttgcttgctttgaaggaaaagcttacaaatggtgtaccagattct |
10417988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 30669548 - 30669586
Alignment:
| Q |
46 |
ctttgcttgctttgaaggaaaagcttaaaaatggtgtac |
84 |
Q |
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| T |
30669548 |
ctttgcttgctttgaaggaaaagcttacaaatggtgtac |
30669586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 30633139 - 30633176
Alignment:
| Q |
46 |
ctttgcttgctttgaaggaaaagcttaaaaatggtgta |
83 |
Q |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
30633139 |
ctttgcttgctttgaaggaaaagcttacaaatggtgta |
30633176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 30660868 - 30660905
Alignment:
| Q |
46 |
ctttgcttgctttgaaggaaaagcttaaaaatggtgta |
83 |
Q |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
30660868 |
ctttgcttgctttgaaggaaaagcttacaaatggtgta |
30660905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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