View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0973_low_2 (Length: 314)
Name: NF0973_low_2
Description: NF0973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0973_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 126 - 285
Target Start/End: Original strand, 46631225 - 46631379
Alignment:
| Q |
126 |
tggttatgtttttactttatttaataaatcaaaatgctgtccaagtggatcaatgttagaaattttgtaatgtgttggttttccattcatttatacaata |
225 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||||||| |||||||||| |||| ||| |
|
|
| T |
46631225 |
tggttatttttttattttattgaataaatcaaaatgttgtccaagtggatcaatgttggaaattttgcaatgtgtttgttttccatttattt-----ata |
46631319 |
T |
|
| Q |
226 |
caatattggttgaattatattttgactggtcccggaatatttatcttttgttaaatggat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
46631320 |
caatattggttgaattatattttgactggtaccggaacatctatcttttgttaaatggat |
46631379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 46630881 - 46630969
Alignment:
| Q |
28 |
gcaaggattgtaaaagaggcaaatcaacgctacatcatcatttttcagatcattgtgctgcagttttagcataggaagaaaagcatttg |
116 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| | || ||||| |||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
46630881 |
gcaaggattgtaaaagaggcaaaacaatgctgcctcgtcattgttcagatcatggtactgcagttttagcataggaagaaaagcatttg |
46630969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 46639471 - 46639546
Alignment:
| Q |
151 |
aaatcaaaatgctgtccaagtggatcaatgttagaaattttg---taatgtgttggttttccattcatttatacaa |
223 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||| | |||||||||| |||||||||||||||||| |
|
|
| T |
46639471 |
aaatcaaaatgtcgtccaagtggaagaatgttagaaattttgtttttatgtgttggtcttccattcatttatacaa |
46639546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 46620687 - 46620762
Alignment:
| Q |
151 |
aaatcaaaatgctgtccaagtggatcaatgttagaaattttg---taatgtgttggttttccattcatttatacaa |
223 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| ||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
46620687 |
aaatcaaaatgtcgtccaagtggaagaatgttaggaattttgtttttatgtgttggtcctccattcatttatacaa |
46620762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 15767683 - 15767582
Alignment:
| Q |
179 |
tgttagaaattttgtaatgtgttggttttccattcatttatacaatacaatattggttgaattatattttgactggtcccggaatatttatcttttgtta |
278 |
Q |
| |
|
|||| ||| |||||| ||||||||||||||| ||||||||||||| | | |||||| |||||||||||| ||| || ||||| |||||||||||| |
|
|
| T |
15767683 |
tgttggaagttttgttatgtgttggttttccgttcatttatacaacata-----ggttgagttatattttgacgggtaccaaaatatctatcttttgtta |
15767589 |
T |
|
| Q |
279 |
aatggat |
285 |
Q |
| |
|
||||||| |
|
|
| T |
15767588 |
aatggat |
15767582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University