View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0975_high_1 (Length: 355)

Name: NF0975_high_1
Description: NF0975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0975_high_1
NF0975_high_1
[»] chr4 (4 HSPs)
chr4 (30-325)||(49228845-49229140)
chr4 (252-321)||(34413357-34413426)
chr4 (267-318)||(53189431-53189482)
chr4 (242-317)||(13938725-13938801)
[»] chr7 (1 HSPs)
chr7 (238-325)||(28164767-28164853)
[»] chr8 (5 HSPs)
chr8 (238-325)||(31498439-31498526)
chr8 (238-325)||(15552450-15552536)
chr8 (231-325)||(1236101-1236195)
chr8 (245-325)||(17915197-17915273)
chr8 (261-323)||(21356186-21356248)
[»] chr5 (4 HSPs)
chr5 (240-321)||(36836912-36836991)
chr5 (236-319)||(5540092-5540172)
chr5 (241-325)||(10032030-10032113)
chr5 (238-325)||(14043152-14043239)
[»] chr1 (2 HSPs)
chr1 (249-325)||(39487501-39487577)
chr1 (262-325)||(931890-931953)
[»] chr2 (2 HSPs)
chr2 (238-321)||(32742067-32742145)
chr2 (242-318)||(37904685-37904760)
[»] chr3 (1 HSPs)
chr3 (249-321)||(52581974-52582045)
[»] chr6 (1 HSPs)
chr6 (241-318)||(647759-647833)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 30 - 325
Target Start/End: Complemental strand, 49229140 - 49228845
Alignment:
Q  30 agtaccctacgacattagctgccgataaattaaattcgtgaaggttccgtatgaaagtaaatggtcatagactacgatctacgttatgtaaccttaattt 129  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49229140 agtaccctacgacattagctgccgataaattaaagtcgtgaaggttccgtatgaaagtaaatggtcatagactacgatctacgttatgtaaccttaattt 49229041  T
Q  130 tggcttcattacgagggttcaatttcatttttgatgtctggaactacaaaaagttgcaccgaagaacatgttnnnnnnntcttaatttttgagctaaata 229  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  49229040 tggcttcattatgagggttcaatttcatttttgatgtctggaactacaaaaagttgcaccgaagaacatgttacaaaaatcttaatttttgagctaaata 49228941  T
Q  230 atatttcatccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagtgata 325  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49228940 atatttcatccgatctcaaatataagaaacaaaaaagaaatgcacacatattaagaaagtggattgaccacatttaagttattataaaaagtgata 49228845  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 34413426 - 34413357
Alignment:
Q  252 taagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagt 321  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  34413426 taagaaacaaaaaagaaatgcacacatattaagaaagtggattgaccacatttaagtcattataaaaagt 34413357  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 53189431 - 53189482
Alignment:
Q  267 aaatgcacatatattaagaaggtggattgaccacatttaagttattataaaa 318  Q
    |||| |||| |||||||||| ||||||||||||||||||||| |||||||||    
T  53189431 aaatacacacatattaagaaagtggattgaccacatttaagtcattataaaa 53189482  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 13938725 - 13938801
Alignment:
Q  242 gtctcaaatataagaaacaaaaaag-aaatgcacatatattaagaaggtggattgaccacatttaagttattataaa 317  Q
    |||||| || ||||||||||||||  ||| |||||  || ||||||  |||||||||||||||||||| ||||||||    
T  13938725 gtctcatatgtaagaaacaaaaaaacaaaagcacacgtaataagaaaatggattgaccacatttaagtaattataaa 13938801  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 28164767 - 28164853
Alignment:
Q  238 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagtgata 325  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  28164767 tccggtctcaaatgtaagaaacaaaaaa-aaatgcacacatattaagaaagtggattgaccacatttaagtcattataaaaagtgata 28164853  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 31498439 - 31498526
Alignment:
Q  238 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagtgata 325  Q
    |||| |||||||| ||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  31498439 tccgatctcaaatgtaagaaacaaaaaaataatgcacacatattaagaaagtggattgaccacatttaagtcattataaaaagtgata 31498526  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 15552536 - 15552450
Alignment:
Q  238 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagtgata 325  Q
    ||||||||||||| |||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  15552536 tccggtctcaaatgtaagaaacaaaaaa-aaatacacacatattaagaaagtggattgaccacatttaagtcattgtaaaaagtgata 15552450  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 1236101 - 1236195
Alignment:
Q  231 tatttcatccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagtgata 325  Q
    ||||||||| ||  |||||| ||||||||||||||  ||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  1236101 tatttcatctggaatcaaatgtaagaaacaaaaaaataatacacatgtattaagaaagtggattgaccacatttaagtcattataaaaagtgata 1236195  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 17915273 - 17915197
Alignment:
Q  245 tcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagtgata 325  Q
    |||||| ||||||||||||||    |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  17915273 tcaaatgtaagaaacaaaaaa----tgcacacatattaagaaagtggattgaccacatttaagtcattataaaaagtgata 17915197  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 21356248 - 21356186
Alignment:
Q  261 aaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagtga 323  Q
    ||||| ||||||||| |||||||||| |||||||||||| |||||||| ||||||||| ||||    
T  21356248 aaaaaaaaatgcacacatattaagaaagtggattgaccatatttaagtcattataaaatgtga 21356186  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 321
Target Start/End: Complemental strand, 36836991 - 36836912
Alignment:
Q  240 cggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagt 321  Q
    ||||||||||||||||| | ||||||  ||||||||||||||||||| |||||||||||| |||||||| ||||||||||||    
T  36836991 cggtctcaaatataagagagaaaaaa--aatgcacatatattaagaaagtggattgaccatatttaagtcattataaaaagt 36836912  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 236 - 319
Target Start/End: Original strand, 5540092 - 5540172
Alignment:
Q  236 catccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaa 319  Q
    ||||||||||||||| |||||||||||||| |||   |||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  5540092 catccggtctcaaatgtaagaaacaaaaaaaaaa---acatatattaagaaagtggattgatcacatttaagtcattataaaaa 5540172  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 10032113 - 10032030
Alignment:
Q  241 ggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagtgata 325  Q
    |||||||||| |||||||||||||| |||| |||| |||||||||| || |||||| ||||||||||| ||||||||||||||||    
T  10032113 ggtctcaaatgtaagaaacaaaaaaaaaat-cacacatattaagaaagtagattgatcacatttaagtcattataaaaagtgata 10032030  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 14043152 - 14043239
Alignment:
Q  238 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagtgata 325  Q
    ||||||||||||| ||||||||||||||  ||| |||| || ||||||| |||||||||||| |||||||  ||||||||||||||||    
T  14043152 tccggtctcaaatgtaagaaacaaaaaaataatacacacatgttaagaaagtggattgaccatatttaagacattataaaaagtgata 14043239  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 325
Target Start/End: Original strand, 39487501 - 39487577
Alignment:
Q  249 atataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagtgata 325  Q
    ||||||||||||||||| |  | |||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||    
T  39487501 atataagaaacaaaaaaaatttacacacatattaagaaagtggattgatcacatttaagtcattataaaaagtgata 39487577  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 931953 - 931890
Alignment:
Q  262 aaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagtgata 325  Q
    |||| ||||||||| |||||||||| || |||||| ||||||||||| ||||||||||||||||    
T  931953 aaaaaaaatgcacacatattaagaaagtagattgatcacatttaagtcattataaaaagtgata 931890  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 32742067 - 32742145
Alignment:
Q  238 tccggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagt 321  Q
    ||||||||||||| ||||||| |||||||     ||||  ||||||||| ||||||||||||||||||||| ||||||||||||    
T  32742067 tccggtctcaaatgtaagaaaaaaaaaag-----cacacttattaagaaagtggattgaccacatttaagtcattataaaaagt 32742145  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 37904760 - 37904685
Alignment:
Q  242 gtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaa 318  Q
    |||| |||| |||||||||||||| |||  || | |||||||||| ||||||||||||||||||| | |||||||||    
T  37904760 gtcttaaatgtaagaaacaaaaaaaaaaa-cataaatattaagaaagtggattgaccacatttaaatcattataaaa 37904685  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 52581974 - 52582045
Alignment:
Q  249 atataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaaagt 321  Q
    |||||||||| |||||| ||| ||| |||||||||||| ||| |||||||| |||||||| ||||||||||||    
T  52581974 atataagaaagaaaaaaaaaa-gcatatatattaagaaagtgaattgaccatatttaagtcattataaaaagt 52582045  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 647759 - 647833
Alignment:
Q  241 ggtctcaaatataagaaacaaaaaagaaatgcacatatattaagaaggtggattgaccacatttaagttattataaaa 318  Q
    |||||||||| |||||||||||||| ||   |||| | ||||| || |||||||||| |||||||||| |||||||||    
T  647759 ggtctcaaatgtaagaaacaaaaaaaaa---cacacacattaaaaaagtggattgactacatttaagtcattataaaa 647833  T

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