View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0976_low_1 (Length: 391)
Name: NF0976_low_1
Description: NF0976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0976_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 107 - 343
Target Start/End: Original strand, 25739462 - 25739697
Alignment:
| Q |
107 |
caactatatttttgtaaattgatgttatatgtgtccaacatcgtaggtatgtttaagattgttgtttgtgtgttaaagttcatgtctctcggttaaaatg |
206 |
Q |
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| T |
25739462 |
caactatatttttgtaaattgatgttatatatgtccaacatcgtaggtatgtttaaggttgttgtttgtgtgttaaagtccatgtctctcagttaaaatg |
25739561 |
T |
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| Q |
207 |
tttaggatattttgttttttgcttctaaacctttgtttcatacattgatcaaattgttttctcgtctgtctgtctttccttagaaattttccctttatta |
306 |
Q |
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| T |
25739562 |
tttaggatattttgtttt-tgcttctaaacctttgtttcatacattgatcaaattgttttctcgtctgtctgtctttccttagaaattttccctttatta |
25739660 |
T |
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| Q |
307 |
ttgagaaatttgaagtccttggtgtttttgtggatat |
343 |
Q |
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| T |
25739661 |
ttgagaaatttgaagtacttggtgtttttgtggatat |
25739697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 138 - 341
Target Start/End: Original strand, 25743099 - 25743302
Alignment:
| Q |
138 |
tgtccaacatcgtaggtatgtttaagattgttgtttgtgtgttaaagttcatgtctc--tcggttaaaatgtttaggatattttgttttttgcttctaaa |
235 |
Q |
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| T |
25743099 |
tgtccaacatcttaggtatgtttaaggttgttgtttgtgtgttcaagttcatgtctcactcagttaaaatgtttaagatatttg--tttttgcttctaaa |
25743196 |
T |
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| Q |
236 |
cctttgtttcatacattgatcaaattgttttctcgtctgtctgtctttccttagaaattttccctttattattgagaaatttgaagtccttggtgttttt |
335 |
Q |
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| T |
25743197 |
cttttatttcagactttgatcaaattgttttctcttctgtctgtcttaccttagaaattttcattttattattgagaaatttgaagtacttggtgttttt |
25743296 |
T |
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| Q |
336 |
gtggat |
341 |
Q |
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| T |
25743297 |
ttggat |
25743302 |
T |
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