View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0976_low_2 (Length: 339)

Name: NF0976_low_2
Description: NF0976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0976_low_2
NF0976_low_2
[»] chr7 (1 HSPs)
chr7 (62-326)||(10327449-10327711)
[»] chr3 (1 HSPs)
chr3 (29-326)||(23645501-23645799)
[»] chr8 (2 HSPs)
chr8 (29-326)||(23869613-23869910)
chr8 (29-194)||(17704815-17704980)
[»] chr5 (1 HSPs)
chr5 (134-258)||(28667256-28667380)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 62 - 326
Target Start/End: Original strand, 10327449 - 10327711
Alignment:
Q  62 atcatatgccacggacccttagttttccagtgcttcgataattttgcggttatttctttagttgtgttcaacttgtcacccttgtacaagaatagccggt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10327449 atcatatgccacggacccttagttttccagtgcttcgataattttgcggttatttctttagttgtgtacaacttgtcacccttgtacaagaatagccggt 10327548  T
Q  162 catgcatatgatgcttgcatttctctaatcccacggcatacatatcctctgtaatttttattgataaattatcccctcaaattgttggttaaggaagtag 261  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||  ||| ||||||||||||||| ||||||| |||||||| ||||||||||||    
T  10327549 catgcatatgatgcttgcatttctctaatcccatggcatgcatatcctc--taaattttattgataaattgtcccctcgaattgttgattaaggaagtag 10327646  T
Q  262 agcactcttaaaagtggccgcaggtgaaagcacctatgaaaaagagcgttgttgttgcagtgcct 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10327647 agcactcttaaaagtggccgcaggtgaaagcacctatgaaaaagagcgttgttgttgcagtgcct 10327711  T

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Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 326
Target Start/End: Complemental strand, 23645799 - 23645501
Alignment:
Q  29 aatgagaactcatagaatccatgatcaagggagatcatatgccacggacccttagttttccagtgcttcgataattttgcggttatttctttagttgtgt 128  Q
    ||||||||||| ||||||||  || ||||| |||| | |  |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  23645799 aatgagaactcgtagaatccgcgaccaaggaagattagacaccacggacccttagttttccagagcttcgataattttggggttacttctttagttgtgt 23645700  T
Q  129 tc-aacttgtcacccttgtacaagaatagccggtcatgcatatgatgcttgcatttctctaatcccacggcatacatatcctctgtaatttttattgata 227  Q
     |   |||||||||||||| || ||||||| |||| |||||||||||||||||||||| ||| | |  | |||| | || |||||| |||||||||||||    
T  23645699 acgggcttgtcacccttgttcatgaatagctggtcgtgcatatgatgcttgcatttctttaaccgcgtgacatagacattctctgtgatttttattgata 23645600  T
Q  228 aattatcccctcaaattgttggttaaggaagtagagcactcttaaaagtggccgcaggtgaaagcacctatgaaaaagagcgttgttgttgcagtgcct 326  Q
    |||||||||||| |||||| |||| |||||| |   |||||||||    ||||||||| |||||||| | || ||||||||||||||||||||||||||    
T  23645599 aattatcccctcgaattgtcggttgaggaagaaatacactcttaaccacggccgcaggcgaaagcacttgtgcaaaagagcgttgttgttgcagtgcct 23645501  T

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Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 29 - 326
Target Start/End: Original strand, 23869613 - 23869910
Alignment:
Q  29 aatgagaactcatagaatccatgatcaagggagatcatatgccacggacccttagttttccagtgcttcgataattttgcggttatttctttagttgtgt 128  Q
    ||||||||||||||||||||| || | |||||||||| |||||| | ||| |||||||||||||| |||||||||||||||||||||| ||||| |||||    
T  23869613 aatgagaactcatagaatccacgaccgagggagatcaaatgccatgaaccattagttttccagtgattcgataattttgcggttatttatttagctgtgt 23869712  T
Q  129 tcaacttgtcacccttgtacaagaatagccggtcatgcatatgatgcttgcatttctctaatcccacggcatacatatcctctgtaatttttattgataa 228  Q
     |  |||||||||| ||| |||||||| |||||| |||||||||| |||  |||| ||||| |||| |  ||| | || |||||||||||||||||||||    
T  23869713 acggcttgtcacccctgttcaagaatatccggtcgtgcatatgatactttgatttatctaaccccatgagatagacattctctgtaatttttattgataa 23869812  T
Q  229 attatcccctcaaattgttggttaaggaagtagagcactcttaaaagtggccgcaggtgaaagcacctatgaaaaagagcgttgttgttgcagtgcct 326  Q
    ||||||||||  || ||| |||| ||||||  | || |||||||  |  ||| |||| |||||||| | || ||||| || |||||||||| ||||||    
T  23869813 attatccccttgaactgtcggttgaggaagaggtgccctcttaaccgctgccacaggagaaagcacttgtgcaaaagtgctttgttgttgcggtgcct 23869910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 17704980 - 17704815
Alignment:
Q  29 aatgagaactcatagaatccatgatcaagggagatcatatgccacggacccttagttttccagtgcttcgataattttgcggttatttctttagttgtgt 128  Q
    ||||| ||||| |||||||||    |||| || |||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  17704980 aatgaaaactcgtagaatccactgccaagagatatcatatgccacagacccttagttttccagtgctgcgataattttttggttatttctttagttgtgt 17704881  T
Q  129 tcaacttgtcacccttgtacaagaatagccggtcatgcatatgatgcttgcatttctctaatccca 194  Q
     |  |||||||||||||| ||||||||| ||| | ||||||| |||||||||||||||||| ||||    
T  17704880 acggcttgtcacccttgttcaagaatagtcggccgtgcatattatgcttgcatttctctaacccca 17704815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 258
Target Start/End: Complemental strand, 28667380 - 28667256
Alignment:
Q  134 ttgtcacccttgtacaagaatagccggtcatgcatatgatgcttgcatttctctaatcccacggcatacatatcctctgtaatttttattgataaattat 233  Q
    ||||| ||||||| |||||| | || ||| ||||| || ||||||||||||||||||||   ||||||||  || || |||||||||||||| | || ||    
T  28667380 ttgtcgcccttgttcaagaacaacctgtcgtgcatgtggtgcttgcatttctctaatcctttggcatacacttcgtcggtaatttttattgacagataat 28667281  T
Q  234 cccctcaaattgttggttaaggaag 258  Q
    |||| | |||||| |||| ||||||    
T  28667280 ccccacgaattgtcggttgaggaag 28667256  T

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