View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0977-Insertion-11 (Length: 360)

Name: NF0977-Insertion-11
Description: NF0977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0977-Insertion-11
NF0977-Insertion-11
[»] chr1 (7 HSPs)
chr1 (118-360)||(7607911-7608155)
chr1 (118-360)||(31770899-31771143)
chr1 (30-123)||(7608224-7608317)
chr1 (30-123)||(31771212-31771305)
chr1 (8-98)||(7608318-7608408)
chr1 (8-94)||(31771310-31771396)
chr1 (278-315)||(14184848-14184885)
[»] scaffold0003 (3 HSPs)
scaffold0003 (159-287)||(36664-36794)
scaffold0003 (159-278)||(42852-42976)
scaffold0003 (121-160)||(36837-36876)
[»] chr6 (1 HSPs)
chr6 (159-278)||(27444385-27444509)
[»] chr4 (1 HSPs)
chr4 (278-360)||(41810334-41810416)
[»] chr3 (12 HSPs)
chr3 (188-283)||(31688156-31688252)
chr3 (188-287)||(31896611-31896711)
chr3 (188-287)||(31912320-31912420)
chr3 (188-287)||(31945968-31946068)
chr3 (301-360)||(52130955-52131014)
chr3 (318-360)||(53689436-53689478)
chr3 (121-161)||(31688056-31688096)
chr3 (220-259)||(952782-952821)
chr3 (309-354)||(52311493-52311539)
chr3 (159-192)||(52131084-52131117)
chr3 (121-161)||(31896771-31896811)
chr3 (121-161)||(31912480-31912520)
[»] chr7 (2 HSPs)
chr7 (315-360)||(1971305-1971350)
chr7 (309-360)||(37362435-37362487)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 118 - 360
Target Start/End: Complemental strand, 7608155 - 7607911
Alignment:
Q  118 tgtattgtaaatgtcaaataattaatgttattggtttccaataaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaa 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||    
T  7608155 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctctacgattcctcatcttcttcaaaaacacacaaaa 7608056  T
Q  216 tcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcggaaaactgatgttattatcacacctctccat 315  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  7608055 tcctttcttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgtgtcggaaaactgctgttattatcacacctctccat 7607956  T
Q  316 tattgttcaatacccatgcaaactctacagtgccccatgcttccc 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7607955 tattgttcaatacccatgcaaactctacagtgccccatgcttccc 7607911  T

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Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 118 - 360
Target Start/End: Complemental strand, 31771143 - 31770899
Alignment:
Q  118 tgtattgtaaatgtcaaataattaatgttattggtttccaataaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaa 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  |||    
T  31771143 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctcttcatctctctacgattcctcatcttcttcaaaaacacacaaaa 31771044  T
Q  216 tcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcggaaaactgatgttattatcacacctctccat 315  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31771043 tcatttcttcttcttctgccttcatttcgaccttctaaagtaaatgcatcatcgttgaccaccgcgttggaaaactgatgttattatcacacctctccat 31770944  T
Q  316 tattgttcaatacccatgcaaactctacagtgccccatgcttccc 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31770943 tattgttcaatacccatgcaaactctacagtgccccatgcttccc 31770899  T

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Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 7608317 - 7608224
Alignment:
Q  30 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 123  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608317 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 7608224  T

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Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 31771305 - 31771212
Alignment:
Q  30 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 123  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31771305 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccagtttttcctcctttcttacgtgacaaaattaattgtatt 31771212  T

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Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 7608408 - 7608318
Alignment:
Q  8 caaataacgctcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctccttt 98  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  7608408 caaataacactcccaaccctaattctcctgttttaggcgccaacaaatctcagcccttggatctaatctgtttgcaattttttcctccttt 7608318  T

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Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 31771396 - 31771310
Alignment:
Q  8 caaataacgctcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctc 94  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31771396 caaataacactcccaaccctaattctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgcaattttttcctc 31771310  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 14184848 - 14184885
Alignment:
Q  278 cgcgtcggaaaactgatgttattatcacacctctccat 315  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  14184848 cgcgtaggaaaactgatgttattatcacacctctccat 14184885  T

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Target: scaffold0003 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 159 - 287
Target Start/End: Complemental strand, 36794 - 36664
Alignment:
Q  159 taaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagt 256  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| || ||||||||||||||||||||||||||||||||||    
T  36794 taaccctcctttctctccatctctctacgattcctcatcttcttcaaaaacacacaaaatccctttttcttcttctgccttcatttcgaccctctaaagt 36695  T
Q  257 aaatgcatcatcgttgaccaccgcgtcggaa 287  Q
    ||||||||||||||||| |||||||| ||||    
T  36694 aaatgcatcatcgttgatcaccgcgttggaa 36664  T

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Target: scaffold0003; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 42976 - 42852
Alignment:
Q  159 taaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaatcctttcttcttcttct---gccttcatttcgaccctctaa 253  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| |||||||||||||   |||||||||||||||||||||    
T  42976 taaccctcctttctctccatctctctacgattcctcgtcttcttcaaaaacacacaaaatcccttcttcttcttcttctgccttcatttcgaccctctaa 42877  T
Q  254 agtaaatgcatcatcgttgaccacc 278  Q
    |||||||||||||||||||||||||    
T  42876 agtaaatgcatcatcgttgaccacc 42852  T

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Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 36876 - 36837
Alignment:
Q  121 attgtaaatgtcaaataattaatgttattggtttccaata 160  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  36876 attgtaaatgacaaataattaatgttatcggtttccaata 36837  T

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Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 27444385 - 27444509
Alignment:
Q  159 taaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaatcctttct---tcttcttctgccttcatttcgaccctctaa 253  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| ||||   ||||||||||||||||||||||||||||||    
T  27444385 taaccctcctttctctccatctctctacgattcctcgtcttcttcaaaaacacacaaaatcccttcttcttcttcttctgccttcatttcgaccctctaa 27444484  T
Q  254 agtaaatgcatcatcgttgaccacc 278  Q
    |||||||||||||||||||||||||    
T  27444485 agtaaatgcatcatcgttgaccacc 27444509  T

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Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 41810334 - 41810416
Alignment:
Q  278 cgcgtcggaaaactgatgttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccc 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41810334 cgcgtcggaaaactgatgttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccc 41810416  T

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Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 188 - 283
Target Start/End: Original strand, 31688156 - 31688252
Alignment:
Q  188 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtc 283  Q
    ||||||||| |||||||||||||||  |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31688156 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtc 31688252  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 31896711 - 31896611
Alignment:
Q  188 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 285  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31896711 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31896613  T
Q  286 aa 287  Q
    ||    
T  31896612 aa 31896611  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 31912420 - 31912320
Alignment:
Q  188 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 285  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31912420 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31912322  T
Q  286 aa 287  Q
    ||    
T  31912321 aa 31912320  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 31946068 - 31945968
Alignment:
Q  188 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 285  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31946068 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31945970  T
Q  286 aa 287  Q
    ||    
T  31945969 aa 31945968  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 52130955 - 52131014
Alignment:
Q  301 atcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccc 360  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52130955 atcacacctctccattattgttcaataccgatgcaaactctacagtgccccatgcttccc 52131014  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 53689436 - 53689478
Alignment:
Q  318 ttgttcaatacccatgcaaactctacagtgccccatgcttccc 360  Q
    |||||||||||| ||||||||||||||| ||||||||||||||    
T  53689436 ttgttcaataccgatgcaaactctacagagccccatgcttccc 53689478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 31688056 - 31688096
Alignment:
Q  121 attgtaaatgtcaaataattaatgttattggtttccaataa 161  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  31688056 attgtaaatgacaaataattaatgttatcggtttccaataa 31688096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 952821 - 952782
Alignment:
Q  220 ttcttcttcttctgccttcatttcgaccctctaaagtaaa 259  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  952821 ttcttcttcttctgccttcatttcaatcctctaaagtaaa 952782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 52311539 - 52311493
Alignment:
Q  309 tctccattatt-gttcaatacccatgcaaactctacagtgccccatg 354  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  52311539 tctccattatttgttcaataccgatgcaaactctacagagccccatg 52311493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 52131084 - 52131117
Alignment:
Q  159 taaccctcctttctctccatctctctacgattcc 192  Q
    |||||||||| |||||||||||||||||||||||    
T  52131084 taaccctcctctctctccatctctctacgattcc 52131117  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 31896811 - 31896771
Alignment:
Q  121 attgtaaatgtcaaataattaatgttattggtttccaataa 161  Q
    |||||||||| ||||||||||||||||| | ||||||||||    
T  31896811 attgtaaatgacaaataattaatgttatcgatttccaataa 31896771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 31912520 - 31912480
Alignment:
Q  121 attgtaaatgtcaaataattaatgttattggtttccaataa 161  Q
    |||||||||| ||||||||||||||||| | ||||||||||    
T  31912520 attgtaaatgacaaataattaatgttatcgatttccaataa 31912480  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 1971305 - 1971350
Alignment:
Q  315 ttattgttcaatacccatgcaaactctacagtgccccatgcttccc 360  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  1971305 ttattgttcaataccaatgcaaactctacagagccccatgcttccc 1971350  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 37362487 - 37362435
Alignment:
Q  309 tctccattatt-gttcaatacccatgcaaactctacagtgccccatgcttccc 360  Q
    ||||||||||| |||||||||  ||||||||||||||| ||||||||||||||    
T  37362487 tctccattatttgttcaatactgatgcaaactctacagagccccatgcttccc 37362435  T

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